RNA id: TU1646


Basic Information

Item Value
RNA id TU1646
length 230
lncRNA type inter_gene
GC content 0.62
exon number 3
gene id G1405
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8957527 ~ 8964495 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGAAGTGAAGTGTCTGTTTGAGTCTCGCCTGAAGACGCACAGACCCGGGGAATGGCTGCAAACTGCGCCCCAGTCCAGCCATAAATTGACAAGTAAAGTTTCTGGCCCTTGCCGGTGGAGCTGAAGTGCTGGCGTCATGGTGAAGAATGTTCCGGAAAGGTAAAAAGCGTcacagcagcagctcctcccaAAGCAGTGAGATCAGCACCAAAAGCAAGTCTACAGACT

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1619 lncRNA downstream 105086 8852197 ~ 8852441 (-) True G1381
TU1612 lncRNA downstream 115772 8841478 ~ 8841755 (-) True G1374
TU1595 lncRNA downstream 287696 8650023 ~ 8669831 (-) True G1363
TU1511 lncRNA downstream 665315 8291718 ~ 8292212 (-) True G1283
TU1509 lncRNA downstream 667765 8288835 ~ 8289762 (-) True G1281
TU1656 lncRNA upstream 10315 8974810 ~ 8977849 (-) True G1415
TU1698 lncRNA upstream 96993 9061488 ~ 9075883 (-) False AMCG00003550
TU1750 lncRNA upstream 210360 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA upstream 210360 9174855 ~ 9179981 (-) False G1492
TU1926 lncRNA upstream 886196 9850691 ~ 9851427 (-) True G1630
AMCG00003537 mRNA downstream 206324 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003538 mRNA downstream 251218 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003536 mRNA downstream 284651 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003531 mRNA downstream 673783 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003528 mRNA downstream 1459435 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003549 mRNA upstream 22610 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003550 mRNA upstream 44622 9009117 ~ 9082850 (-) True AMCG00003550
AMCG00003548 mRNA upstream 187389 9151884 ~ 9155291 (-) True AMCG00003548
AMCG00003553 mRNA upstream 217606 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003552 mRNA upstream 289359 9253854 ~ 9254096 (-) True AMCG00003552
TU1027 other downstream 3601059 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4296160 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 5527255 3394657 ~ 3430272 (-) True G531
TU462 other downstream 6518706 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 6555632 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1986681 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2138831 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2959313 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3111543 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 4070458 13034953 ~ 13035489 (-) True G2236

Expression Profile