RNA id: TU1750


Basic Information

Item Value
RNA id TU1750
length 4758
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G1492
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9174855 ~ 9179981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATAATGTCAAAGGATAGGTGTTAATAAACCTTGTTGGTTGCACTAGGTCATAAGTCTGTGGATGCCGTGTTCTGCATAACTGGGGAAATGGatgaaaaacacagctgtatcaATTGAAGATAAAAAAGGCACTGTATGGTCTTTTGGTTAGGTAAGAATGTTAACCCAATACAATCTTCTGTGGTAGAGTCTTTTCTACATGAAACGGTTTTGTTCACATCTtgtcatacatatatatgactGGATTCTAACCCAAGCAAATCAAGACTACAGGTGCCAGAGCagatgacaaaaataaatccataaaaataaaggggtgggggagaaaaaacagcaagatctgagattgatgtatttattgttttgaatcTGATGAGTAATGATGAGAGGTCAGGAGTTAATCATGTATGTTACAGAGTacaggaggaaaagaaaagtctTAATGCTTCAGTTACACTTTATGGAAGTCATACAGGCtaaagaatacaaaatcagaaagcagattaaaaaaaataaaagcttcagATTCAACCATTTTTCCATAACTTCGCAATATGCCAGGCTTTCCGAGGAACACACATTGCAAAGAAATGCACAATATTTCCTGTTTGGAGCATCTGCTCTAGTGCTTTAACCTGTATTTCGAATGGCCCGATCAtttctctcctcttttctgTGGACATGCATCTTATTTAAAAGCTCTGATCTTCAAGTCCAGACCTAAAGCACGAGCAAGACTGAAGACAATATGGGCAGAAGCGCATTACAAAAATGgcagtagttatttttcttcatcctTCCTGACTAATGTCCAGTGACTCTTTCCCTTCTAAGATTTGAAGCTGGAATTTGCCAGAGCTGTTCTCTGCAGTGTCTTATGGTAGATGTGTTCAGAAggagctgtgtttgtttgttttctggtaGAAAGCACAGTACTGATTTCTAAAACGGTGCCAAGTCCTTTTCTGTGAAGCTAGTGTTTCAGGCTGAGAGGATGTGATATTTAAGACAGAGATAAAATagtttgtgtatataaatatatatacatatacacacaccaaatGGCAAATCGACTGTTGGGAAAACGAGTTCTGACAATTGTTCGTGTCAAAGAAGATCATTGAAGGAGCTGGTCTTGTGTTGTCAGTTTTTGTCTACTTAAAAGTTGTCTTTTCATCCCCAAATTgagaacagatttgtttttgaagcctaactttgagaaatacatttcttcGAGGGCAGCACTtttacattcaaaacatttctcaagtcacttatttaatagaaaaatgttttatagattattaatttttgttttatacagtttaaaaggaaaataattaaaaagatgaCAAATCGAACTATCCATGCAGTGAGTGACAGGAGTGTCTGGGGTGTCATGTGCATGTGGGGGGGCTGCGCTCTGTGCACTCTGGTCACCACACTTTCATGTCCAGCAGCTGCAGGTCGCCCAGGATCTCCACCTGTTGGATGCGGCTCAGATCCTGCACTCTGTGTCTGAAGTCCAGCAGGTGAATCCCGTTCACAGCCACCTTGAACTGATGCGCTTCACACAAGATGATCTCAAAATACTCCCCCGGAGTGAAGGGGAATTTGGGCAAGGTGTTCGAGGGGAATTTGGGCAAGGTGTTCTCCTCGGGGCCCCAGCACTCGTGCAGGAAGGAGTTTCTGATGAACACACCGGCTTTGATGCGGGGATTGAGGTGCAGAGCGATGTCACTCGACGTACTGGAGCCCAGGTTCACGGTGAAGCTGCGGGGCCGCAGACAAAGTTAATCGTTTGCAGAAAAATCGGAGTTTTTTTTCACAGCAACCCACATTATTAGGGTACTTTGCGTGAGGAATGCATTTTATAACGCCGTGCTGTGGTAGTTCACACAGACCCTGCACTACGACGGATGTATGGAAGATGCCGTCATTTAATTCCATTACAAGCCAGACGTTTTTCAAGAGATGCCATCCTACACCTACACAAAACATGTCACAGTGCTTTTGTGCGGCAGAACACATCAGCGGCAGCAGAGCTACAAAGCAGCATACCTCCCTGCAGCAAGACTCGGCTCCTTTGTGAATCAGACTCGAGCAAGGGCGCCGCGCATGCCACAGAGAATCAGCCTCACTTCACAGGTTGACCTTCGAAATCACTTGTTTTGCTCAACATCCAACGAGATTCTGCAGCGGCAGCGGCTTGTGGGTTTGTTCGCATCCGTTGTCTTGTCAATagccaccacccccccccaaaaaaaattatataacaaACACAGATTCCAGATGTGTGCTCTTTGccacagaaaatgaatgcagaGTAAACCCTTCCCTACCTGTGCGGATACGCATTGATCTGTCCTTTAATCATAATGGTTTGTCCCGGCCTCATTCCGTTAAATAGACTTCCTTTGTAAGGAAGGGTCTGCAACAGAAAAAGACAGTGTATATCAATCTGTGTGCACTAGACTGGAATTTATTTGAGTGTTTTTAAGACTACAGGGCTGTGTGATGCCCTAGGATATTATGCCAACTGCCAGTGGGTTGACAAGACTCTATGGCTGTGTGTAAATACATCAGTTACTGTAAGAGGAATCTAACAAGCCAATATCTTCACTGGAGTCATTCAGTTCATTTTTAGAAAGTGAAACGTAATGCCAATTAAGAACGGATGGCATAATTTGATTGCGATGTTCTGGATCCCTTCCCTGTCTGGCGTTTGTTTATATCCGATCATTTGGCCGTGTCACAGCGATGAGTGTGATCTCAGCACACACTACACATTGTTTGCCACAAATATGTTCAATTATCTGTTTAGGCTGTTTTTTGCTGAACAAAATATCGGAAATACTTACAAAGTCGAACGATTCAGAAAACAgttcctgcaaaacaaaaatcaagaagtcttagaaaaatatttttaaataaataagaagtgCCTGAAGCCCCTGAGGATTAATCAAGTGCTGTTTTTGAAGGATCAAGGCATGAAAGAAGCAACAGTCATCTATGCGCTCCGGGTTCCCGCTTTTCCCATTTCAAGTAGTAGTAGAGATCCATTAGAACACAGTTAACAAGTATGTATCAGACACACAGTCACGCAAAGACACCATATGAGGGTCACATTTccttaagaaaaactaaaaatggccGATTACATGCTTGTAAGAAGTCAGGACAGTAGGGCTAGTGTTATGAATGtggatttttgtttaatttgattttaaacctaaaacaaatccatttaaCTCTATATAACCAGACACACCCACCTTAAATATGTCATGAGTGTACTACTATATACACACCCAGCATAACcaaaccttttttccttttgcatttaTGCGTTTTTATATCTTTTGCTCCAGTCTATTCAACTTGACACTTCGatgattaaaacatgtaaagcaaattaatgtttttcaggCACAAAATATGGCTAAGGTGAAATCGAAAGCGGACACACATTGGGCAAGGAAATTTTGTCACAGAAGTTAAATGTCCCTCAATATCGCTCTATACTGCAGTGACCCCAGTCAGATGTATAAATGACAGGTCaccagaaaatgaaaagttgCGATTGCTTTAGGAATAGAAAATCAAAGATCACATCCTTACATTcagatgtgtgtctgtgctcatCGCAATTGATGGTGGTGGAGTCGAggtctgaaaatgtaaaacactgaaCACAATGAACACTGGCACGACACATTTCACACAGGAAATCGTGCACGGgaacacacatgtacacacacacacttatttttgtaaaaatcaGCCGAGctttacattgaaaacaaagacaaacacttATGACAACAACTTAACAGAATCAATTACTttacaaagaaatgtaatactggGATTGCAAAGTTAGAACTTAAAAATGTGATATGATGAAGCACatggaagaagaaagaaaaaaaaatgccattccTCCCACAGAGTGATCTACATGTAGTGAATTACAACTACATCCCAAAGCACGGGTGGTTGTGAAATGTTGGCTGAAAGGGTCATTCTTCGTTGCAAATCGTGCTGGATTGCGACTGTGAAACACTACCCACTCCCAACAGTTCAGCACCCGGCCACATTGCATCTGGAGCTGTTGATTTggttttttggttttatgtaaGCATGGTGTGTACAAAACAGAGCTTTGCTCCTTTGGGGTTAAGCAAAGCCTGatgaaaaatagattttatttccaGCCTTAAGTCACACCTTTAACCATTATTGTTCTGTGAATATTTTAGCACAGAAAAACACTTATTCTTCACAGTGTCATGCTCAAAAGGGTTTGACAGTTATAGTCTGTAATGTGATCATCACTAACCAggcaacaaaatgaaaataaaagattgtTTACCCAGAaactacatttttatattttaattgaaggaTTCCCAACAAATACTGCTCACAAGTAACAGCTACAAACTAgttcatttaaatatagttaTTAGACTATAGATACACTAACactacagtaaaaaaaacaaatacttttaatacagaatagtttttttccccagataAGAAGGGGATACATAATAGTATCCATCTGCTGCGGTTGGGAAGGAAGTAGGATTTGTCTCTATATTAAAATACGATTGTTACTTACAGAGCTTAAAAAGAAAGCGACGACGTCCACTTTTACTTTGCCATACATCCCCAGCGTGTTGACCCTCGCGAGGTCCACTCTGTGTCTGAACTCCACGGTATGCATCCCATTCACCGCCAC

Function

GO:

id name namespace
GO:0043412 macromolecule modification biological_process
GO:0006464 cellular protein modification process biological_process
GO:0036211 protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698 lncRNA downstream 98972 9061488 ~ 9075883 (-) False AMCG00003550
TU1656 lncRNA downstream 197006 8974810 ~ 8977849 (-) True G1415
TU1646 lncRNA downstream 210360 8957527 ~ 8964495 (-) True G1405
TU1619 lncRNA downstream 322414 8852197 ~ 8852441 (-) True G1381
TU1612 lncRNA downstream 333100 8841478 ~ 8841755 (-) True G1374
TU1926 lncRNA upstream 670710 9850691 ~ 9851427 (-) True G1630
TU1927 lncRNA upstream 672088 9852069 ~ 9852338 (-) True G1631
TU1930 lncRNA upstream 673218 9853199 ~ 9857286 (-) True AMCG00003572
TU1935 lncRNA upstream 694689 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 694689 9874670 ~ 9878381 (-) True AMCG00003573
AMCG00003548 mRNA downstream 19564 9151884 ~ 9155291 (-) True AMCG00003548
AMCG00003550 mRNA downstream 92005 9009117 ~ 9082850 (-) True AMCG00003550
AMCG00003549 mRNA downstream 169064 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003537 mRNA downstream 423652 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003538 mRNA downstream 468546 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003553 mRNA upstream 2120 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003552 mRNA upstream 73873 9253854 ~ 9254096 (-) True AMCG00003552
AMCG00003554 mRNA upstream 88522 9268503 ~ 9312491 (-) True AMCG00003554
AMCG00003555 mRNA upstream 227396 9407377 ~ 9429572 (-) True AMCG00003555
AMCG00003559 mRNA upstream 352934 9532915 ~ 9533577 (-) True AMCG00003559
TU1027 other downstream 3818387 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4513488 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 5744583 3394657 ~ 3430272 (-) True G531
TU462 other downstream 6736034 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 6772960 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1771195 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1923345 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2743827 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2896057 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3854972 13034953 ~ 13035489 (-) True G2236

Expression Profile