RNA id: TU1927


Basic Information

Item Value
RNA id TU1927
length 270
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1631
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9852069 ~ 9852338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCACGGGTGGCTGAGAGACTTGTCCACACTGTACCGCTTTCTCATTTTCACTTGAAGGAGATTGTTGATTAGATCAGTGGCTGTGGAAGAGAATGAATTACCATCCTTATTGAATAAAACACAGAGCTGAATTCAAATTGTTGGAAATAgaaaagacagacaaacacagacaagtgCATGTCTCATTACAGAGCAATTGTCTTTTCTCTTGCATGAATCTTGCAACAAattagaccaggggttcccaactcTGGTTCTGGAGTaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1926 lncRNA downstream 642 9850691 ~ 9851427 (-) True G1630
TU1750 lncRNA downstream 672088 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA downstream 672088 9174855 ~ 9179981 (-) False G1492
TU1698 lncRNA downstream 776186 9061488 ~ 9075883 (-) False AMCG00003550
TU1656 lncRNA downstream 874220 8974810 ~ 8977849 (-) True G1415
TU1930 lncRNA upstream 861 9853199 ~ 9857286 (-) True AMCG00003572
TU1935 lncRNA upstream 22332 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 22332 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA upstream 22332 9874670 ~ 9878381 (-) False AMCG00003573
TU2052 lncRNA upstream 562600 10414938 ~ 10415887 (-) True G1744
AMCG00003563 mRNA downstream 74701 9774896 ~ 9777368 (-) True AMCG00003563
AMCG00003565 mRNA downstream 92759 9747764 ~ 9759310 (-) True AMCG00003565
AMCG00003566 mRNA downstream 114206 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003564 mRNA downstream 165775 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003567 mRNA downstream 195595 9636471 ~ 9656474 (-) True AMCG00003567
AMCG00003572 mRNA upstream 4773 9857111 ~ 9865649 (-) False AMCG00003572
AMCG00003573 mRNA upstream 22352 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003574 mRNA upstream 256300 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003578 mRNA upstream 384411 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003577 mRNA upstream 425902 10278240 ~ 10316839 (-) True AMCG00003577
TU1027 other downstream 4495601 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5190702 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6421797 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7413248 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7450174 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1098838 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1250988 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2071470 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2223700 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3182615 13034953 ~ 13035489 (-) True G2236

Expression Profile