RNA id: TU2052


Basic Information

Item Value
RNA id TU2052
length 470
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1744
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10414938 ~ 10415887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACCGGCTGTTGTGATCCCGACCTTTGCACTGGAAGTTGCACATAACTATTtactttgaggaaaaaatagCACGAATATACCGTTTGGAGAACATGGTGTCGCCAGGGCGCGCATGTGCGGCTCCACCAGCTGCGCAGTGGAGAACAGCAGGACATCTGCaagagacggacagacagagagacctAAAGTGGATATGGTCGCACAGTTCACAGCacagaaaattacttttttgtaaaacaaacaaacaaaaaatcatgaataattTGCATTAAAGATAACCCACAACCCTACATCACAattataatagtagtagtagttgtagcagtataaacaaacattcactttatgttttttatgtatgtatgcatctaTGTATTGTAGACAAATTACTTGCCAGATTCTTTGTTAAATTGGTACCACCCATTCTGTCAATATATATcagcaaataaataagtttgtttgttatta

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935 lncRNA downstream 536557 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 536557 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 536557 9874670 ~ 9878381 (-) False AMCG00003573
TU1930 lncRNA downstream 557652 9853199 ~ 9857286 (-) True AMCG00003572
TU1927 lncRNA downstream 562600 9852069 ~ 9852338 (-) True G1631
TU2119 lncRNA upstream 209459 10625346 ~ 10626035 (-) False AMCG00003587
TU2212 lncRNA upstream 634264 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 965985 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 965985 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 965985 11381872 ~ 11386054 (-) False G1935
AMCG00003579 mRNA downstream 23903 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003577 mRNA downstream 98099 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003578 mRNA downstream 142171 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003574 mRNA downstream 299832 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003573 mRNA downstream 536494 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003582 mRNA upstream 163011 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003584 mRNA upstream 168773 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003587 mRNA upstream 209980 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003589 mRNA upstream 455454 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003586 mRNA upstream 535197 10951084 ~ 10956353 (-) True AMCG00003586
TU1027 other downstream 5058470 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5753571 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6984666 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7976117 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 8013043 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 535289 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 687439 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 1507921 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1660151 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2619066 13034953 ~ 13035489 (-) True G2236

Expression Profile