RNA id: TU2212


Basic Information

Item Value
RNA id TU2212
length 928
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1856
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11050151 ~ 11051078 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaattttaatgcattttaataggtaacaaaaggtgaaaaatgtCAGGGGGTGTAGACTCTATTGACTTTCtacatatgtgtgtttatatatatatatatatatatacacacacacacacacacacataaacagacTCCATGTTATACATCTACATTCTACAGCTTTAGCTGTACATTAAATACtttactatacattttaatgtagtgacttaaaaataatcagaGATTGAATGgagatacagtactgtgcaaacgttttaggcaggtgtgataaaatgcagtgaagtaagaatgctttcaaaaatagacattaatagattatatttatcaattaacgaaatgcaaagtgagtgaaaagaagacaaatctacatcaaatcaatatttggtgtgaccaccctttgccttcaaaacagcatcaattcttttaggtacacttgcacaaagtcagggattttgtaggcatagtCAGTcatatgattaaacaattatagcaaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaatcattaactgaaactaacagctgtgtaggaggaataaaactgggtgaggaacagccagactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcaaacaccatggcaagactgagcacagcaagtggttggccaaggaaacttactgcagcagatgaaagacacatcatgctgaCTTCtctttgcaatcggaagatgtccagcagtgccatcagctcagaattggcagaaaacagtgggaccttGATACACctatctactgtccagagaagtctgctcagaagtggccttcatggaagacttgcagccaaaaagtcattcctccgacgtggcaacaaggccaagcgactcaactatgcatgaaaacacaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2119 lncRNA downstream 424116 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 634264 10414938 ~ 10415887 (-) True G1744
TU1935 lncRNA downstream 1171770 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 1171770 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 1171770 9874670 ~ 9878381 (-) False AMCG00003573
TU2311 lncRNA upstream 330794 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 330794 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 330794 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 681726 11732804 ~ 11863101 (-) True G2044
TU2465 lncRNA upstream 692911 11743989 ~ 11789275 (-) True AMCG00003618
AMCG00003592 mRNA downstream 53326 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003588 mRNA downstream 86950 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003586 mRNA downstream 93798 10951084 ~ 10956353 (-) True AMCG00003586
AMCG00003589 mRNA downstream 105276 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003587 mRNA downstream 417039 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003595 mRNA upstream 12043 11063121 ~ 11116905 (-) True AMCG00003595
AMCG00003596 mRNA upstream 98991 11150069 ~ 11183677 (-) True AMCG00003596
AMCG00003597 mRNA upstream 198009 11249087 ~ 11250247 (-) True AMCG00003597
AMCG00003600 mRNA upstream 294866 11345944 ~ 11366600 (-) True AMCG00003600
AMCG00003602 mRNA upstream 320686 11371764 ~ 11372057 (-) True AMCG00003602
TU2164 other downstream 93816 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 5693683 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6388784 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7619879 3394657 ~ 3430272 (-) True G531
TU462 other downstream 8611330 2437727 ~ 2438821 (-) False AMCG00003422
TU2225 other upstream 52248 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 872730 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1024960 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1983875 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 2053278 13104356 ~ 13111128 (-) False AMCG00003652

Expression Profile