RNA id: TU225


Basic Information

Item Value
RNA id TU225
length 1900
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G188
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1033660 ~ 1035682 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttttttttaatggtggaGTCCAAATTCAATGTGGATAAGATCAATGAACTCAAAATGTTATGTATAACCACTGGAAATTCtaaattttaaacatttgttagaTGCTTTATGCTTCTGATTACTGTAACAGTCTTCAAACAGTGGGTACAAGAAAACCCTATATATTAAGTTATCATATTTGCTTTGAAGCTCAAATCTGCCCCTTGGTGATGAGTTCAGAGTAAAAACCACAACTCCCTCCATGTTTCCTATCCCCCTTTTATAGCTTTGGAtcaaaccaatcaatcaatgttAAGGAAAACCTACTTGCCATTGACAacaagacattaaataaataacccccTACATTATAccaaatatacttatttatgcTGTATCATTACAAACTGACCACATACACCTATCTTCATTATTCCCATTAATGATATTTAGATACATTTCCATCATATAAAGCACACATCAACACGATACCACCCTCCCACATATGTGAAGTGGAGCATGGGTATTTAAACTGGAAATGGTCTTTGTGCGATATGTGAATCACTCTCATATCCAAAGAAAACTGTAAGCCTTTCACTGCAATGAAACCGTACAGGAATAACAAAGAGGAAACCTTAGCagacagaaaatacacataCTGGCAAAGgaaggcaaaaacaaacaaaacaaatgctgtttGTTTAAGATGCTATCTTCACATGGTTTCATGGCAGGCAAAATTCCCCCACATAACAACACCAGATAAGTATTGGTTATTTAATCTCATACAGCTATAATAGTGATATATGATGTTAACAAACACTTTCAGCATAGGCAACAGCAAAACAGGTCAAAAGTAACAGTAAAacaggtgaaaataaaaacGATAACAATCATGATGGTATGAATGGAAATTTCTTAATAAGGGATGAGATGCAATGTGGTTTCATTGCTGTCGGTTTAAAGTTTAACAGGAcaacaaatatgtaaatcttGAAAGTTCAGATGCTTATTAGAAAGTCCTAATAGGTTAGCCACTTTAGTTAGGAGCTGATATGGATACAGTCAGAAATTCAAGGAGTGTGTCTGCAAGGTGAAGATAGATGGTCCAGTGATGCCAGGTTCCTGTGGTCCTCCAAATGTAGTTTGGAAAGATGGTTGTACAAAAGAAAGGAGTCATAGTCACTTAGATATTCCAATGAAGCCACGGCTCTTTCATGGGTCATGCACTTTCTCTGGCTGGGATCTGGAGGCTGTTCTCTGGTCAAGATGATTGTTCTGCTGGTGTTGCAAGGACAAACTGTCTTTAGCATGGAGCGAGAAGCTACTGTGTGGAATTGTTCCAATTCAGTATGCCTATTCCAATGATCGGGGGAGAATTCTAACTGTTCCTAAAGTTAGCATTTTTGCCTGACCACTAAAGCATGTTCGATGACTTTGAGAGAATTATCAATACCGTCTGAGGATCTGACATAATGTCACAAAGTATCCTGTGGAGTGGAGACTCAAAGTTGTGTTAAAGTTTTTAAGGGAAGTTAATGTTAATTAGCGCTTATTGGCTTTCTCCCAAGTTGTAGACTGTGGGTCATGGCACTCATGGTATATGTCTCATTGGTGGGATACTTGGGGTAGACTCACCGCCAAGCAATTCGCTGCTCACCAGGTAGCTGTCAGTATTACATCTTTATGCCTTTGCTTGCAGAATGTAGGTGGGAGATTTACATCTTCCAGATACAGGATCAATTGTGTGAGAAAGTGGCAGAGGTTCCATCTGTGAAATAATGGATGTTTAGCACGCTGTTCGGAACCCCTaaactgtgtgttttaaaagataTCAGAGAACATCTTACTTTTTTTGCCTGCTAGCAATGACCTGTATCTGAAAGGTCAGGgatctggagagggagaagagtgATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205 lncRNA downstream 76464 945238 ~ 957196 (-) True AMCG00003400
TU150 lncRNA downstream 263674 734766 ~ 769986 (-) True G122
TU136 lncRNA downstream 417340 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 418023 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 418023 614470 ~ 615637 (-) False G112
TU251 lncRNA upstream 106556 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 552135 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 678895 1714577 ~ 1714856 (-) True G263
TU330 lncRNA upstream 790815 1826497 ~ 1830075 (-) True G277
TU332 lncRNA upstream 805116 1840798 ~ 1843781 (-) True G279
AMCG00003400 mRNA downstream 76491 945223 ~ 957169 (-) False AMCG00003400
AMCG00003401 mRNA downstream 103082 919312 ~ 930578 (-) True AMCG00003401
AMCG00003399 mRNA downstream 230947 671361 ~ 802713 (-) True AMCG00003399
AMCG00003394 mRNA downstream 369384 660528 ~ 664276 (-) True AMCG00003394
AMCG00003393 mRNA downstream 405970 619566 ~ 627690 (-) True AMCG00003393
AMCG00003402 mRNA upstream 32357 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003403 mRNA upstream 208872 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003404 mRNA upstream 218187 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003407 mRNA upstream 620703 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003416 mRNA upstream 1035146 2070828 ~ 2088149 (-) True AMCG00003416
TU425 other upstream 1361960 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1361960 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1402045 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2358975 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3615089 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile