RNA id: TU2565


Basic Information

Item Value
RNA id TU2565
length 3170
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2125
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12220322 ~ 12259643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcattttgtggGACAAACCACACCGCATATCATAAATGAATACTTCAATCATGTAGTATTTGACATACTTATTTTGACATATCACTACCTGAACCAGAGTAGGCTTTCtcctttttcaattattttttgaatagACATTACAGATCACTTatatcataaataaaattattttgcgGACAAATGTCGTCCTGTTGTTCCAAACACCTGAATTGTGCACAATAGTACTACCTTAGTGTTTGCCAAAATATTTTCACTGCACAAATTAGAATAATGTGCTCAAATCCCCTACGTTGGTGTCTAGTGATCTTGACACTAGAGTCGCAGAGGAAGAGAATATTGTTCACTCTGATGATAACATCTTCACTACAGAAGTAGACGCACCGTTGAGGAATTGGTTCTCTCAGAGTGATGGTAGTTATgccttttattttgaatgctgTACATGTGGGGACATTAGGTTTCCAGGGCACTTCCACATTAAATATTTCTCAGAAAAGACAAAAATCCCATCTTTGTAACCTAATGCtgagaaataatatataactgTCATAAATGAGTGTCTAGTAATTCTGGCACTGGCAAAAAAGGTTGTATATGCATAACTGTTTTGCTCAGCAGCACTGTGAAAGAAAGGCAGATGAGCTTCAGGCTTTAAAGACTGTCCTTTAAAACTATGGATTATTTGActatttgttcatatttaatatgCAAGACTACACCAGCCCCAGTTTAACAGCTTTTCTGGTACAAGGTTATATCGGGGCTGCCATCACACTTCTGAGATTTCATCACAAATGCGTTCGATGTGGTTGActttattttgaactttttttttaatctatacatttaatttaagattaacataaattaaagtTAACTGACCTGCTATGAGGGTGCTTATAATCCTAGAGGTGGTAATAAACTATAGCACAGCTATTGACTAAGACTGTAAATGTCATGGGATgtcaattaagaaaattaatgagaaaataaaatctcatgTGTGACATCCAGATCATTAGAGAACAATATTTCTCTCATCCCCAGTCCCAATAAACATATTTGAGTGTAATGTGTATAGATAAATTCAACACAATACTTGTGGGgtcatttgcaaaacaaattatcaTTTCCATTTGACAAGATTGGAAAATGAATTTTAGCCAACAAATCAGAGCACAACAATTCCTTCATTTGCATAAGAGATTTGAGATTTAGTGGAAACCGAAACTgccaagttttttttccttttttattttttaatgtaactggGCATGCTGTGAAATTAACAGGTTTATGAGCAAATAATGAGAAATCcaggttttaaaatacaagctATTTAAGGCAACTTGtgaaaaaatctaatcaaaagAAATAAATGGAACAGGAGGAAGCCTAGCCAAGATGTGGGGGCTGGAAATGAGCAAGCCAGACAAAATGGCCAGCCCAGAACTGTGTCCAGATTATAGTACAAAACCAAcgctgattaaaaaaacaaaacgacacaGAAGGCATGATAACCACGCTCATTCAGAATCACAAGTGTAATTTCGTAGCGGTTGCTGTCAATAATGAACATGTATGGCTCCTGATGACGGACCAGTGGTGCCCTATGAAAAcggaatataaaacaaacattgcacCTCGAATGCGTTGCATACTGGTCGCCTGGTCACTCAGGTCTTACTACTTTATGACACTGCATGAACAGAAAAGGCATATTTCCTGCCTAAAACACCCCCTTCCCTCTTCCCCGCACCCCCCACATTAAAACCAATATCTACAAATACTTTTTGCAAGTGAGCAGTTCCTAAATGGCGCAGTGTAATACTGTGACCTATGTACAGAAGCGATGCTCGGGCCCAGCTCCATGATGGGGGTTTCCAACTGTGACCTACATGTTCCATAACCTTCGATGGTCTCAGATTCCAAAAAGCATAGGTAGAGATCGGTCATGACCCAAAAGTCATTTTACCCGTTTGCACATTTGCTTTTGCCGTGGAGAGAGTATACATCTCCCTCTGTTTGAGAAATGGCCATAACAGGATGACGGCAAGTTTACAGTTCTTGTCTCAACATCCACTCAATGTTAAACGGTGACAACGGTGAATTAGAAGTCATTCTTGTGCATCTTAATTGCATATTAATCTCAGAACACAACGGTCATCTTGTCCGAGTGGCCGATATTCCACAAGAGACTCTGGCAACCGACACCGACTCGCACTTATTGCACATGCTTTCAAAACCTTCCCATCTCCCTCCTGTGTTGATGCCGAGAGGACGCCAGCGTTACGAACAGTCTTTTGTGGAAATTTCCTCCTGTGCAATACATCGTTCTGAAAGGGGTAAACATGATGACAATGACttatttagaaagaaaagtGGGTTACAGCCCTGTTTGTGAGCTCTCCCAGATGATactatattaaatgaaaaccgACATCACCTGAACTATTTTATATGGGCCATCTTCACCGACCAAGTAACACGTAGCACAATCCCGATATCCCTCGCACTACGCACAGGGGAAAGGTGGTATCATTAATCTTAGTTTCTCTTGCCTATTTTTGAGAATCGATGCCGTTAAACGAAACCATAACGCATCCTAATGCCAAGTCCAGCACTGACACTCAGCCCAGACCCCTCCCCGGACCAATGGATGAATTGCAGCATGCTTAAACACAGTAGATCATAGGTCTCTTTACAGTGCAAGAAAAGCCACAACCAACTCTGTCATACTGACCCAGGATTAATAGTTTCACTAAGAGGgagaagacaaataaaataatatttaaaaaaaagggaagaaaacagTTGCAGAGGATGTATAGGCTTCCACACCAAGATGCTAATCCTTAAAACAAGCCACCTGTAATGGCAGGAAAGATTACAACACGTGAGCAGTCCGTTCTTCTGCAGCATGGcgggggggcaggggcaggcGTAGGCGTCTGCAATGGCCTCAGGAAGTGCCCTGTCGCTTTTGTTGCTGGGCTCGGATGATTTCAAGTTGTTTTTTGCACTGCTGGAAATACGTGGAGAGACTCTTGTTCTCCTCCAGGAGTTTCTTGTGCTCCTGGACCAAGCGGGACGTGTTCTGCTGGTCCTTCTCGTCCTGGTCCAGCTCTGCGATCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2511 lncRNA upstream 131336 12087537 ~ 12088986 (+) True G2086
TU2454 lncRNA upstream 192129 12026126 ~ 12028193 (+) True G2042
TU2434 lncRNA upstream 314134 11905983 ~ 11906188 (+) True G2027
TU2424 lncRNA upstream 388902 11813122 ~ 11831420 (+) True G2018
TU2400 lncRNA upstream 490331 11725083 ~ 11729991 (+) True AMCG00003614
TU2587 lncRNA downstream 127960 12387603 ~ 12388058 (+) True G2139
TU2631 lncRNA downstream 642992 12902635 ~ 12903622 (+) False AMCG00003643
TU2723 lncRNA downstream 815045 13074688 ~ 13080021 (+) True G2250
TU2742 lncRNA downstream 838918 13098561 ~ 13101316 (+) True G2264
TU2745 lncRNA downstream 842814 13102457 ~ 13102666 (+) True G2267
AMCG00003630 mRNA upstream 71423 12147640 ~ 12148899 (+) True AMCG00003630
AMCG00003628 mRNA upstream 75394 12132846 ~ 12144928 (+) True AMCG00003628
AMCG00003624 mRNA upstream 195388 12006436 ~ 12024934 (+) True AMCG00003624
AMCG00003622 mRNA upstream 363589 11851827 ~ 11856733 (+) True AMCG00003622
AMCG00003620 mRNA upstream 379826 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003634 mRNA downstream 590490 12850133 ~ 12854702 (+) True AMCG00003634
AMCG00003639 mRNA downstream 606774 12866417 ~ 12868471 (+) True AMCG00003639
AMCG00003633 mRNA downstream 612870 12872513 ~ 12880357 (+) True AMCG00003633
AMCG00003642 mRNA downstream 631525 12891168 ~ 12901958 (+) True AMCG00003642
AMCG00003643 mRNA downstream 642923 12902566 ~ 12917002 (+) True AMCG00003643
TU2385 other upstream 642993 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 728879 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 2439420 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2956854 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 3567918 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 777794 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 895417 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2158873 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 3776020 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 5422174 17681817 ~ 17683988 (+) True G3047

Expression Profile