RNA id: TU2588


Basic Information

Item Value
RNA id TU2588
length 324
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2140
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12387608 ~ 12387931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcgttgtcatgctgcagaataaatttggggccaatcagatgcctccctgatggtattgcatgatggataagtatctgcctgtacttctcagcattgaggagaccattcattctgaccaaatccccaactccatttgcagaaatgcagccccaaacttgcaaggaacctccaccatacttcactgttgcctgcagacactcattcgtgtaccgctctccagcccttcagtgaacaaactgccttctgctacagccagatatttcacattttgactcatcagtccagatcacctgctgccatttttctgcaccccagttcctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2504 lncRNA downstream 319350 12068049 ~ 12068258 (-) True G2079
TU2494 lncRNA downstream 336117 12051245 ~ 12051491 (-) True G2071
TU2489 lncRNA downstream 360450 12026919 ~ 12027158 (-) True G2066
TU2475 lncRNA downstream 481937 11858921 ~ 11905671 (-) True G2052
TU2458 lncRNA downstream 524507 11809819 ~ 11863101 (-) False G2044
TU2590 lncRNA upstream 29997 12417928 ~ 12418336 (-) True G2142
TU2618 lncRNA upstream 481570 12869501 ~ 12869951 (-) True G2168
TU2653 lncRNA upstream 510500 12898431 ~ 12901945 (-) True G2196
TU2702 lncRNA upstream 643997 13031928 ~ 13032764 (-) True G2234
TU2703 lncRNA upstream 645308 13033239 ~ 13034060 (-) True G2235
AMCG00003632 mRNA downstream 104116 12256469 ~ 12283492 (-) True AMCG00003632
AMCG00003631 mRNA downstream 210976 12156367 ~ 12176632 (-) True AMCG00003631
AMCG00003629 mRNA downstream 256997 12079468 ~ 12130611 (-) True AMCG00003629
AMCG00003625 mRNA downstream 309476 12075319 ~ 12078132 (-) True AMCG00003625
AMCG00003626 mRNA downstream 410647 11958572 ~ 11976961 (-) True AMCG00003626
AMCG00003638 mRNA upstream 195206 12583137 ~ 12595386 (-) True AMCG00003638
AMCG00003635 mRNA upstream 230855 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003636 mRNA upstream 447586 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003640 mRNA upstream 470345 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003637 mRNA upstream 474876 12862807 ~ 12865753 (-) True AMCG00003637
TU2508 other downstream 309456 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 447825 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1282936 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1431273 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7031140 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 647022 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 716425 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1621527 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 2422855 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 3127742 15515673 ~ 15591730 (-) True G2665

Expression Profile