RNA id: TU2653


Basic Information

Item Value
RNA id TU2653
length 3493
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G2196
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12898431 ~ 12901945 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCatcagtatttttattattaaaagaagaaacaatCACACACTCCATTACATGAAAAATGACCACATCCAAGAATCAAAGTGTGGCTAGAAAGTTTGCTATCTGCAAAACATGAGCAGAATGGACAGTGGTACTGACCAAATCaattatataacaaaacaacaaaaactatacatttattacagtGTTGCAGAAACTTTCATTATGAAATTTCCTCAAGTGTTTaaacttcaaaaaataaaataatgcattatgttCAGTAAGATGTTgagaaataaatagtattttattcagGGAAGGCGGCAAAGCAGAGGTTTTTGACCTGTCTTTCACATATAAAAGATTGATCATTGAAACATAAACAAGCCGTTCCTTCAACCAGCCTGGCGAAACCGTCTTgaagcttgtttgtttttatcctgtGAGTCAAATTCATTcagctcaatctccttcttTCGTTTGCAAGGGAAGACCCATGGGTCTGGGTCTGGGTCCTAGAAGCTTTTTTAAAACCAACAggacatatataatgtatatattatatatcctTCAGTGTGCACAAGGTCTACTTGAATATTACAGATGGACTTTTCTGCTAATATATTTAGCATACTAAATTGAAATCCTGGGGATCTGATTTTcatacagattttgttttgtaaacaaaattatatattaatttaaaaccagaTTATTTCTCCCCATGCAGTTGGAATAGCAATTACTATTGACTGACTGCTGTAATCCGTGCAGCAGTGTAGAAAACACAAAGACCCTTCCTACACTGTGAGGGGGAGGACTCACAGCACAATGCAAAGAATGAGATCACTGTTTATGTAGCAGCAGTAAACTAgcataatgtgtgtttttcaggaGTCTAGCAACAAACGGTTCGACTTCAGACAAACATTAATGGTGGAAGGAACTGCTAATGGTGGCAAGATTTAGTCTGGTTACAGATGTGTGGAGAGAGTGCGGATCTTGATATCATATTGGCGTTGAAGACCTGTGTTGAGGACTCCATGATGGAGGATCCAGATTTCTGTCTTTCTGAAGTCTTTTCAGTATATAAAGTGCATGTATGCTTTTAGGTGCTTGGCACATTGGCCATAAACTTGTAGGTCAGAATGagcactttaaaaacacaatcttCTAAGAATCCATAAATCTAACCTTTCAATCCACCGTCTTGTATTGCTTTCAAAatgatattaaatcaaattaggGGCTTGCGTTTTGCCTTGactgaaaaacacataaaacaaacgTCCCTAATTATAATGTACATCACCAAAGTAAtgttgtaatatataaaaaccCAACCTAGTATCTACAAGAACTCTTGACAGGCAGGCTGACACACATCCTGTGCTGTCAATCCACTAGCTTATTTCCATAAATCACAACCAACAGAGCTCTAACACCACAGACAGAACTAACAGCTCTCACTACTAACACTGCAGACAGAAATGCAGGTTTCCAATGAGCCAGAGAGTCCCTGTGTGTGGCACACCAAGGAAACCCTGTCTGACTCTGAACACAGCTACTCCCAGGGGGAATCCCTGTCAAAGCTGGCAATGATGTGCCATCCATACAGTAAGGCTCGGACTCCTCTCATTATCGATTATAGATGTAAACGGTATAGACGAAAGGGTCCCCAATCCTGGACCCAGAGGGCTGCAGTGCAAAAGATTTTTGGGAAAAGCAGCCTCgttcaattaatacaatattgagTTAAATTAGGTACTTAGGAGCCCAGGTTGAATGACACCTTGAAGATACTGAAACATTTCAGGACCAGGACTGGGGACGTGAAATTCAAACTATAAATCATagaacctttttgtttttacagttctACAAGTCAACCATTAAAGACTACATGATTTAAATCTGaatatgcacatatacatattcataattatacacacacacacacacacacacacacacacacacacacatccacagAAACAACAGTCTGTATTAATATTTAGGTGGAGGTTCACAGAAAAACAGTAGCAGAAGAATTTTTAGCAAACCTGGTGAGGGCCAAAGACTGACAAAACCAGTGGATTGCTGCACACTCTTACATTAAAATTTTTCTCTGAACCTCTATGCATTAATAAAGactatacattttttgaaaaatatccTGTTTGTGCGTGTTTGTCTGACTTTCAGACTTGGAAGTTATTGGATTACATATTGTGACACAGTGATGGTTTCGTACAGGCGATAAGATATACAAAGAAGAAATGTCTCCCCCCTCCTGGAGCTCTTGTACAGTAACCAGTTTAGGTGTACTGGGATCTGTCACTCACACACCTGACAGCGTGGGAAAAGAGACACACCTACAGGCACTAATGAATGGAGCCCTATAAAGCGGCAGCTCTCCAGCTGTacctgagggggaaaaaaggagggCGTTTAGGAGAACTTCCGAGCTGCAAGAGGAGGAACCCGTGCGAACCCGTGCGACTCTGACCTGCTAACTGCATAACAACCAGTCTGTGCTATACCTTCCTTTGGGATTTGACCTGGACTACACTATGACTCTGATTATGACCTTTGACTCCTGCTTTCCCACAATGACTATGAGGCTGCTTAACAACTGCAAGCATTACCTGACGGTTTTGATTGGGGGACCGAGAAGTGGCCTGAGCATCGCTAGGGATTTGCTTACAGTGTTAGCTATTGCCCAGACTTGGACTAGGATTTCCTGTTGTTTCCACAGCCTTTGTCATGTCATCCGAGACATACAACCCAGGTCCCACACCCTGCtctgtgtcacaatatatatagatacatacatgtgtgtgtataagtatgtataaatatattatagtcaatacattattactataattgacagaatattaattaaaagacaTCTTCTCTTCCCTTATTTACAAGGGAACAAGCCGAGATCCTTGCTGAATGGTTTAACACAGAAATACTCTTCAATAGATAAGACAGACAACAACGAGAACTAAAATCCAGAATTACACCCCAAATGTTTGAATAAGGCGCCTAACTGGTCCTCCTGAACTGTGTCCTCAGTTGTTCCTGAcctttgttctttgttcttgGGAGTCCACAAGACTTGTCACAACTTAAATGTGTGTTAACAATGATTAAAATAGGTTTGGcaacactaaaaaaaaacattaaactaaaGAGAAACAGACATACAGGTGAGTAAGTTGATAGCAGACCTCTTTACCTCTTAAAAGGATTTTCAATTGTAAGAAATTGTGTGAACAACTTTAGTGGTTTCAACCATAAAGCTGTCACACTGGCAGTCTACaaagtctcttttttttttttttttttttaaaaggcctTTTTCTTGATCCTGCTGCAAATGTCTTTGCTAATTTGGCATTGTGGTAATGAATAATGAAGGCAATAGTCACTCCCTGCAGCTGTACCTCTCTGAAACATGGCACTCAGACTACAGTCGAGCAAGGACTGTTTTCCGGATTGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618 lncRNA downstream 28480 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 480095 12417928 ~ 12418336 (-) True G2142
TU2588 lncRNA downstream 510500 12387608 ~ 12387931 (-) True G2140
TU2504 lncRNA downstream 830173 12068049 ~ 12068258 (-) True G2079
TU2494 lncRNA downstream 846940 12051245 ~ 12051491 (-) True G2071
TU2702 lncRNA upstream 129983 13031928 ~ 13032764 (-) True G2234
TU2703 lncRNA upstream 131294 13033239 ~ 13034060 (-) True G2235
TU2732 lncRNA upstream 169851 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 169851 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA upstream 175703 13077648 ~ 13080021 (-) True G2257
AMCG00003644 mRNA downstream 7296 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003637 mRNA downstream 32678 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003640 mRNA downstream 37764 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003636 mRNA downstream 43114 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003635 mRNA downstream 273742 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003646 mRNA upstream 3427 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003645 mRNA upstream 24750 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003650 mRNA upstream 135747 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 154049 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003652 mRNA upstream 178247 13080192 ~ 13116660 (-) True AMCG00003652
TU2508 other downstream 820279 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 958648 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1793759 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1942096 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7541963 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 133008 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 202411 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1107513 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1908841 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2613728 15515673 ~ 15591730 (-) True G2665

Expression Profile