RNA id: TU2702


Basic Information

Item Value
RNA id TU2702
length 837
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2234
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13031928 ~ 13032764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCAATAGTCCTGAGGATGGTGGTGTAGTTATTGAAGAAGTTAGTGTAGGCCCTCAGTCGGGTGCTGAATTTGACGCACACGTCCCCGATGCACTGGGAGGGACCCCACTCCTGTATCCGCTCTGCCAGCTCGTCCAGGAACTGTCTAAGGGGGGATGACAAGATGACCACAGTCTCTCGATGGGATGGATGTTTGACTTCctgttttgcacatttaaatgtatcatgaTGGGGAGGCAAAAGTCCAATCTAGCTACTCAAATTGTTCATAATCCAAATCAGTATGACTTCTGGTATGGTTCTGTCAATACAATGAAAGGGAGCTGAACTTTCCAGTCTGTTTTCATGACTTCCTAAAAACCATTGAGCTTCGCTTCTCATTAAAGACTGAGCTTTTAAAATCTGATGATTAATTGATGCCCCGGATCACTTACTCCCGGCAGCCAATCACATTCCTCACACTGTGACATTGTCGTGAATGTCAAAAGGAGGTTTATTAAGAAACACTGACTCCGCAGGACTTGCAATGTAGAGAGTGGAGGAAGGTCTAACTCAGGTGTAATACAGAACAGAGAAATCAACTCTCTCATTCGCAGGGGTCGGCGCTTGGCGGACTTCACCTGTTGAGCTCCGCGACGTCTAGGATGTCAGAGAAGATGATGAGGACATTGGCAGAGCTCAGGATGGCGCGGTTTGACGATAAAGCGGCTCTGAGTGGAGTGACGTATACGAGTCTGACGGCATCCAGCAACTGGACGTAGCGTTTCTCGCTGTGAAACAACTCCCTGGCAAACATGGTGCGCCGGTCCACAGAGCCCACTGGCAACGTCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653 lncRNA downstream 129983 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 161977 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 613592 12417928 ~ 12418336 (-) True G2142
TU2588 lncRNA downstream 643997 12387608 ~ 12387931 (-) True G2140
TU2504 lncRNA downstream 963670 12068049 ~ 12068258 (-) True G2079
TU2703 lncRNA upstream 475 13033239 ~ 13034060 (-) True G2235
TU2732 lncRNA upstream 39032 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 39032 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA upstream 44884 13077648 ~ 13080021 (-) True G2257
TU2744 lncRNA upstream 67748 13100512 ~ 13101318 (-) True G2266
AMCG00003645 mRNA downstream 63772 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 125039 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 140793 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003637 mRNA downstream 166175 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003640 mRNA downstream 171261 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003650 mRNA upstream 4928 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 23230 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003652 mRNA upstream 47428 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003662 mRNA upstream 84602 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 184777 13217541 ~ 13233616 (-) True AMCG00003660
TU2508 other downstream 953776 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1092145 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1927256 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2075593 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7675460 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 2189 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 71592 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 976694 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1778022 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2482909 15515673 ~ 15591730 (-) True G2665

Expression Profile