RNA id: TU2704


Basic Information

Item Value
RNA id TU2704
length 537
RNA type TUCP
GC content 0.48
exon number 1
gene id G2236
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13034953 ~ 13035489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCCTTGGATTCTACAAGATCTGGTGGGTTGAAATTGTGGTTTTGATTAGTTACCGTAGAGCAAATAGGCTAAAAGGACTCAAGTCTGGTCGTATTTTTTGTCCTACAGGGCGGTGTCGATGAGACTTACATCTGGTGTCGGCGATGCCATGCACAGAAAGCCGGTGAAGGGCCACAGAGGCCAGGAAGCAGCGTGTGGTCCTGCAGCGGCGCTCGAAGGGCACCTGAGAGACCGTCCTGTTGCAGAGGACCAGAGCGTCGTTGAACAGAAACAGAGTGAGTTCCCCGACGTGCTCGTAGATCCTGCGAGGTGGAGAGCAATCCGTGTCAATGTCcaagtacaaataaaaagctCCGAGTGGGACTTTAAGGTCCTCCAGTCCTGGTCCTACATACTTTACAAACTCTTTGAGACTTTGAATTGTGATCAGTGAAGCAGTCGGTTAAGGATATTCAGAGATGATTTTGTAGCTAACACCTGAATATCCTTCAAGAGTTCCCTGGGATGGACAAACAAGAGCCCTAATGGATCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2703 lncRNA downstream 893 13033239 ~ 13034060 (-) True G2235
TU2702 lncRNA downstream 2189 13031928 ~ 13032764 (-) True G2234
TU2653 lncRNA downstream 133008 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 165002 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 616617 12417928 ~ 12418336 (-) True G2142
TU2732 lncRNA upstream 36307 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 36307 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA upstream 42159 13077648 ~ 13080021 (-) True G2257
TU2744 lncRNA upstream 65023 13100512 ~ 13101318 (-) True G2266
TU2769 lncRNA upstream 96131 13131620 ~ 13143528 (-) True G2285
AMCG00003645 mRNA downstream 66797 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 128064 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 143818 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003637 mRNA downstream 169200 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003640 mRNA downstream 174286 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003650 mRNA upstream 2203 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 20505 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003652 mRNA upstream 44703 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003662 mRNA upstream 81877 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 182052 13217541 ~ 13233616 (-) True AMCG00003660
TU2508 other downstream 956801 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1095170 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1930281 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2078618 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7678485 5345839 ~ 5356468 (-) True AMCG00003484
TU2747 other upstream 68867 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 973969 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1775297 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2480184 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4907088 17942577 ~ 17944942 (-) True G3181

Expression Profile