RNA id: TU2734


Basic Information

Item Value
RNA id TU2734
length 1338
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G2257
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13077648 ~ 13080021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGCACTGCGAGatttgctcttctgtttgttcAGTAGTGCTTACAGGTGCCAAATAGCAAAGTCTGAATAATATCTTAATCGCAGCATCCAAGTAAAGGATCCTGAGTTTTGGTTAGTTAAGTAGCTGGGGAAGGTGAGTGTCAATAGAAAAGTCAGAGGTATGACCTCATATACTGTTCCTTTAAGTTcaatatacctttttttttttttctcttaactCCCCATTGCATAATTTGTGGTATGGTTGAGTTAACTGAGGTTTTTTTTCAGTGTCAGATGTGCTTGTCTCAgagttttttttccataatgTTACTGCAATTTGAACTCCAAGAACTGAGCACAGAGAAGTAAGCACTAGGAGTCTAGTAAAGCAAGATTAAAGCTTGAGTTGtcaaaaaaaaagggggggggtgAAAGAGTAATGTCTCATTTATTCACAAGTAATGCATACTGGTAGGTTTTCCCTTGTGTTTCGTTTTGCCCTGTCTGTATGAAGACTGCTGTACCTTCCTGTTCAAATCAGAAAGTTTGGAGCTTCTGACTGTAATCCAGCTTTGTCTTCTGTTACCATTCAAGAGAGAAGTCCCAAATGTATGTCTAAGTATCGTTGAATTGACTcatacaatactttttttttacataaaataaagccctttgcttgattttcttttgtttgccCCCCttatctttctttttgtgttgttatttttctgtttaatctgTTAGCTATTTGGTAATCTCTACaagcaataaaatattttaaggtTCCAGATACTGCTTTTCAGCACAGCTAGCATGTGAAGCTTCCAGTAAGTTTACATCGACTATTCCTGTTGAAGTAAGCAGGGTATTGGAGTGTCTCTGATCTAGACTATATACGCTGTTGTGAAAGGGTGCAATAAAGCAAATCCCCTGGAGCAATGGTTCTCAAACCTACAGACCTACAAAACCTACAAATCCAGCAGACCtaccctgctggattttgttccaactgagcttggttacttaattgaacccttaattgaagtaattagattacatttgactctttagattgtgtaactgataacaAATTGGTTCCTTAACAATtttcttatacaattttaaacttaaCTTAAATCCCCTACtgctaaaaataattaaaaggctctgatttaggaaattattagttaaattaagggttaaattaagtaaaaaccagcagggtaggtggtacttcaggacaggtttgagaaccactgccctGGAGGGTAGTTCTGACATTGAGGTCCTCACGAATATATCGATAAGAAAATTGTTGAAAAAGTGTGCTGGGGCAACGACTGGCAAATAAAAGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2703 lncRNA downstream 43588 13033239 ~ 13034060 (-) True G2235
TU2702 lncRNA downstream 44884 13031928 ~ 13032764 (-) True G2234
TU2653 lncRNA downstream 175703 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 207697 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 659312 12417928 ~ 12418336 (-) True G2142
TU2744 lncRNA upstream 20491 13100512 ~ 13101318 (-) True G2266
TU2769 lncRNA upstream 51599 13131620 ~ 13143528 (-) True G2285
TU2772 lncRNA upstream 92611 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA upstream 97439 13177460 ~ 13178172 (-) True G2287
TU2776 lncRNA upstream 153474 13233495 ~ 13236993 (-) True G2291
AMCG00003651 mRNA downstream 12094 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003650 mRNA downstream 27256 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 109492 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 170759 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 186513 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003652 mRNA upstream 171 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003662 mRNA upstream 37345 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 137520 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 154052 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 171077 13251098 ~ 13270245 (-) True AMCG00003658
TU2704 other downstream 42159 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 999496 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1137865 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1972976 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2121313 10951176 ~ 10956335 (-) False AMCG00003586
TU2747 other upstream 24335 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 929437 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1730765 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2435652 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4862556 17942577 ~ 17944942 (-) True G3181

Expression Profile