RNA id: TU2744


Basic Information

Item Value
RNA id TU2744
length 807
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2266
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13100512 ~ 13101318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNAGATTCCTACAACACTATTCTCATTCCTCTTCATTTATACAGTCCACAAAACCAgataattttaaataagattATCACAATTCATATTACTGATTtgacattgtaaaatattaatgtacTTATTGTATGCCAGCTTTCAGTTTTAATACCTGTTCTCTGTACCTCCCTTCCCTTGTAATTAGAATGAACAAATTGTCAATTTCCCAACTGAATGACACTTCTTGGATCATTATGAAGCTAGCTTGGATGTTATTTCATCTGGCCAGTCCTACTTTAGAGAACGGTCTGGAGAAACTTACTGTTACATTGGACAGCTTTTGAAACCATTTAATAGGAATACGTGCTGAAGTctgaaatataatatatgaaaCATGCCACCACTTGTAACTTTATACTTGTACCTGTGTAACTCTTTTACTGGAATTCACATTTGatcaaatactactactaataacacattttaatacaaagtgTATAgtatattacaaatgtatacaatatattagtttaatttatatttaggGAATGAagtatataaaactataaaaaaactattaaaaaaagaatcataacaaatgtaaaagaTGTAGACAgatgtgcaacaaaatatacaattgagAACATACAgcagattatattttgtgtCTCTGGTAATGAGCCAAGTGGATGCAAATAAAATGAGAGCAAAAAAATTAGCTCAGCCTATTTAGCATGTTAATCATTTTCCTTGTGTCAGCTTTACTGATGGCTTCAGCTATAAAACAACATTGTCATTTAAACATTGTCCTTGAAATTCTGATAATAT

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00380 Tryptophan metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko04610 Complement and coagulation cascades
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2732 lncRNA downstream 18568 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA downstream 18568 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA downstream 20491 13077648 ~ 13080021 (-) True G2257
TU2703 lncRNA downstream 66452 13033239 ~ 13034060 (-) True G2235
TU2702 lncRNA downstream 67748 13031928 ~ 13032764 (-) True G2234
TU2769 lncRNA upstream 30302 13131620 ~ 13143528 (-) True G2285
TU2772 lncRNA upstream 71314 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA upstream 76142 13177460 ~ 13178172 (-) True G2287
TU2776 lncRNA upstream 132177 13233495 ~ 13236993 (-) True G2291
TU2820 lncRNA upstream 313543 13414861 ~ 13415156 (-) True G2324
AMCG00003651 mRNA downstream 34958 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003650 mRNA downstream 50120 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 132356 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 193623 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 209377 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003662 mRNA upstream 16048 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 116223 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 132755 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 149780 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003657 mRNA upstream 180133 13281451 ~ 13283514 (-) True AMCG00003657
TU2704 other downstream 65023 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1022360 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1160729 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1995840 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2144177 10951176 ~ 10956335 (-) False AMCG00003586
TU2747 other upstream 3038 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 908140 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1709468 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2414355 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4841259 17942577 ~ 17944942 (-) True G3181

Expression Profile