RNA id: TU2745


Basic Information

Item Value
RNA id TU2745
length 210
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2267
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13102457 ~ 13102666 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTCTATTGGCAATCATATAGTGGTGCTGGGAAAATCTACCCCCAAGAGCAGGGGtgctcaatcctggtcctggagagcccctgtccagcaggttttagatGTCACCCTtgtatcaccaatttataaacacctagaagtatttcattctgatgAATGATGCaggtggtttggtaaattcagtgcTTTAGAAACCATCGGAGCAATtg

Function

GO:

id name namespace
GO:0004519 endonuclease activity molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2742 lncRNA upstream 1141 13098561 ~ 13101316 (+) True G2264
TU2723 lncRNA upstream 22436 13074688 ~ 13080021 (+) True G2250
TU2631 lncRNA upstream 198835 12902635 ~ 12903622 (+) False AMCG00003643
TU2587 lncRNA upstream 714399 12387603 ~ 12388058 (+) True G2139
TU2565 lncRNA upstream 842814 12220322 ~ 12259643 (+) True G2125
TU2760 lncRNA downstream 124569 13227235 ~ 13228357 (+) True G2281
TU2780 lncRNA downstream 144643 13247309 ~ 13254443 (+) True G2294
TU2819 lncRNA downstream 312265 13414931 ~ 13415156 (+) True G2323
TU2822 lncRNA downstream 382926 13485592 ~ 13485807 (+) True G2326
TU2825 lncRNA downstream 405221 13507887 ~ 13509930 (+) True G2329
AMCG00003653 mRNA upstream 10363 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 47276 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003648 mRNA upstream 64859 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003649 mRNA upstream 78218 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003641 mRNA upstream 176401 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003655 mRNA downstream 53568 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003654 mRNA downstream 139385 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003656 mRNA downstream 217537 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003666 mRNA downstream 634936 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 694613 13797279 ~ 13797599 (+) True AMCG00003668
TU2685 other upstream 59860 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1525128 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1611014 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3321555 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3838989 9255828 ~ 9263468 (+) True AMCG00003551
TU2754 other downstream 52394 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 1315850 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2932997 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4579151 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 5035089 18137755 ~ 18142633 (+) True AMCG00003779

Expression Profile