RNA id: TU2769


Basic Information

Item Value
RNA id TU2769
length 360
lncRNA type intronic
GC content 0.45
exon number 3
gene id G2285
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13131620 ~ 13143528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAAATCAGATTAATGACAGAGCTGCGACGGGAAGGCaagcagtgacattttaaaccaGGGTAAACACAGACAAGCTCAGTTTAGGAGATACCTTGTGCAGTGGAAGGTCTTCCTACTCAGAAGAGCAATGGCTCCAGATGTTGATTGCGACAAactcttattttttgtaaatgggACAAAGattgTTGAAAAAAATGCTGATCCAGAAATGACCCTTTTGACGTATCTAAGAAGAAAATTGGGCCTGACAGGAACCAAGCTGGGCTGTGCTGAGGGAGGGTGCGGCGCTTGCACAGTGATGGTCTCCACGTTCCATCCCCATATGAACAAGATCGTGTATCCTTTCTTAACACGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2744 lncRNA downstream 30302 13100512 ~ 13101318 (-) True G2266
TU2732 lncRNA downstream 49676 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA downstream 49676 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA downstream 51599 13077648 ~ 13080021 (-) True G2257
TU2703 lncRNA downstream 97560 13033239 ~ 13034060 (-) True G2235
TU2772 lncRNA upstream 29104 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA upstream 33932 13177460 ~ 13178172 (-) True G2287
TU2776 lncRNA upstream 89967 13233495 ~ 13236993 (-) True G2291
TU2820 lncRNA upstream 271333 13414861 ~ 13415156 (-) True G2324
TU2833 lncRNA upstream 364364 13507892 ~ 13508930 (-) True G2337
AMCG00003652 mRNA downstream 14960 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003651 mRNA downstream 66066 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003650 mRNA downstream 81228 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 163464 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 224731 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003660 mRNA upstream 74013 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 90545 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 107570 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003657 mRNA upstream 137923 13281451 ~ 13283514 (-) True AMCG00003657
AMCG00003659 mRNA upstream 146771 13290299 ~ 13316898 (-) True AMCG00003659
TU2747 other downstream 20492 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 96131 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1053468 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1191837 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 2026948 11103326 ~ 11104672 (-) False AMCG00003595
TU2876 other upstream 865930 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1667258 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2372145 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4799049 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 5003132 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile