RNA id: TU2820


Basic Information

Item Value
RNA id TU2820
length 296
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2324
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13414861 ~ 13415156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttattgcttcccttaatggcaggcacagcgtcaaaaagcaaaacaaaacctagctctgtccgagcactaactaaacgtcaacaatccctaactacaaaacaaacactaacaataacagtaaatgcccgggtcggtagagccgaacaccgggcaaacagaagcacgacaggggcaaggcaggttcgtagtcacagtccgtaatcaaagttcgttaccagTGGGAgtttgtcagacagtccggggttcaagagggagaatggtccaggtccagaaaaagggtcgcAAGCCAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2776 lncRNA downstream 177868 13233495 ~ 13236993 (-) True G2291
TU2772 lncRNA downstream 236689 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA downstream 236689 13177460 ~ 13178172 (-) True G2287
TU2769 lncRNA downstream 271333 13131620 ~ 13143528 (-) True G2285
TU2744 lncRNA downstream 313543 13100512 ~ 13101318 (-) True G2266
TU2833 lncRNA upstream 92736 13507892 ~ 13508930 (-) True G2337
TU2847 lncRNA upstream 314291 13729447 ~ 13732039 (-) False AMCG00003667
TU2957 lncRNA upstream 994080 14409236 ~ 14410253 (-) True G2443
TU2958 lncRNA upstream 1000223 14415379 ~ 14415673 (-) True G2444
TU2959 lncRNA upstream 1003422 14418578 ~ 14419732 (-) True G2445
AMCG00003663 mRNA downstream 16014 13387807 ~ 13398847 (-) True AMCG00003663
AMCG00003659 mRNA downstream 97963 13290299 ~ 13316898 (-) True AMCG00003659
AMCG00003657 mRNA downstream 131347 13281451 ~ 13283514 (-) True AMCG00003657
AMCG00003658 mRNA downstream 144616 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003661 mRNA downstream 178814 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003664 mRNA upstream 94635 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003665 mRNA upstream 130195 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003667 mRNA upstream 249587 13664743 ~ 13729698 (-) True AMCG00003667
AMCG00003677 mRNA upstream 923270 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003685 mRNA upstream 972399 14387555 ~ 14394904 (-) True AMCG00003685
TU2747 other downstream 303733 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 379372 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1336709 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1475078 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 2310189 11103326 ~ 11104672 (-) False AMCG00003595
TU2876 other upstream 594302 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1395630 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2100517 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4527421 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 4731504 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile