RNA id: TU2826


Basic Information

Item Value
RNA id TU2826
length 437
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2330
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13510238 ~ 13510674 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCCTGCATTCTGAGTGACGTTTTGTACCTGATGAGCCTCTCAGGATCCAATTTGTTTCGTACACCGCTCACATGCAAATTACTCACCTTTGTATGTTGAGTATCAGCACTCCATAAATATGGGCATGCCCCTGCACAGAAATTTGCATTATATCCTTTTGGTTCATGGATCCATTTCCAACCAAGATCCCTCTTAAAGTCAATGAATAACGGGCGCAAGCAGCAGTTGTCCTGTACATTcctgtaaaaaacaataaaataaacagaagtcagGTATTTAGCACATTGTGTTAAACATCTCATAAAAACCTCAAAGCACTACAAAGATGTGGTGTCCTATACACTATACTGCGGAGGGATTTATTGAAAAGGGATAAACTATAACAATAATGTTTAATGAAAGGATCAATAAAGAGATCTACACAGGCATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2825 lncRNA upstream 308 13507887 ~ 13509930 (+) True G2329
TU2822 lncRNA upstream 24431 13485592 ~ 13485807 (+) True G2326
TU2819 lncRNA upstream 95082 13414931 ~ 13415156 (+) True G2323
TU2780 lncRNA upstream 255795 13247309 ~ 13254443 (+) True G2294
TU2760 lncRNA upstream 281881 13227235 ~ 13228357 (+) True G2281
TU2827 lncRNA downstream 861 13511535 ~ 13511829 (+) True G2331
TU2828 lncRNA downstream 1520 13512194 ~ 13512531 (+) True G2332
TU2829 lncRNA downstream 1926 13512600 ~ 13512998 (+) True G2333
TU2830 lncRNA downstream 3986 13514660 ~ 13515065 (+) True G2334
TU2832 lncRNA downstream 29298 13539972 ~ 13541154 (+) True G2336
AMCG00003656 mRNA upstream 185016 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003654 mRNA upstream 263383 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003655 mRNA upstream 303399 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003653 mRNA upstream 418144 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 455057 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003666 mRNA downstream 226928 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 286605 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003670 mRNA downstream 498797 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003669 mRNA downstream 545777 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003673 mRNA downstream 581339 14092013 ~ 14190098 (+) True AMCG00003673
TU2754 other upstream 353611 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 467641 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1932909 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2018795 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3729336 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 907842 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2524989 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4171143 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4627081 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4635986 18146660 ~ 18152314 (+) True G3108

Expression Profile