RNA id: TU2958


Basic Information

Item Value
RNA id TU2958
length 295
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2444
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14415379 ~ 14415673 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgaagttaaaaacacaaaagcaaaaagcagaacacaatgGCACTAACTCTGAACCCCTCGTACCTGCCGTCTCTGGAGCGGTGCAGGCTGCCGTGGTAGCTGCTCATCTTGCTGTGGACGCTGCCCGCTTTGCTGCGCTGGTCGTCCAGCATTGCCAGGTGGGTGGAGGAGGCGTGGGTGGAGGTGCCCTGGGTGGAGGTGCCCCTGGACTTGCGAATGATCGGGGTGTTGGGGTCTCGGAGCAGAGACTGGGCGAAGTCCGGCTCCTGCAGTACCTGCCTGCTCTCGTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2957 lncRNA downstream 5126 14409236 ~ 14410253 (-) True G2443
TU2847 lncRNA downstream 683340 13729447 ~ 13732039 (-) False AMCG00003667
TU2833 lncRNA downstream 906449 13507892 ~ 13508930 (-) True G2337
TU2820 lncRNA downstream 1000223 13414861 ~ 13415156 (-) True G2324
TU2776 lncRNA downstream 1178386 13233495 ~ 13236993 (-) True G2291
TU2959 lncRNA upstream 2905 14418578 ~ 14419732 (-) True G2445
TU2961 lncRNA upstream 5058 14420731 ~ 14421315 (-) True G2447
TU3021 lncRNA upstream 283286 14698959 ~ 14699237 (-) True G2494
TU3120 lncRNA upstream 700310 15115983 ~ 15116183 (-) True G2565
TU3188 lncRNA upstream 899723 15315396 ~ 15318210 (-) True G2615
AMCG00003685 mRNA downstream 20475 14387555 ~ 14394904 (-) True AMCG00003685
AMCG00003677 mRNA downstream 60846 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003667 mRNA downstream 685681 13664743 ~ 13729698 (-) True AMCG00003667
AMCG00003665 mRNA downstream 853182 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003664 mRNA downstream 900479 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003686 mRNA upstream 10612 14426285 ~ 14461583 (-) True AMCG00003686
AMCG00003684 mRNA upstream 61251 14476924 ~ 14483379 (-) True AMCG00003684
AMCG00003687 mRNA upstream 112968 14528641 ~ 14531680 (-) True AMCG00003687
AMCG00003689 mRNA upstream 201790 14617463 ~ 14644456 (-) True AMCG00003689
AMCG00003692 mRNA upstream 590744 15006417 ~ 15016678 (-) True AMCG00003692
TU2876 other downstream 402358 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 1304251 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 1379890 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 2337227 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 2475596 11923808 ~ 11939783 (-) True AMCG00003623
TU3027 other upstream 395113 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 1100000 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 3526904 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 3730987 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 5009290 19424963 ~ 19425366 (-) True G3517

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_02947447_02975918.mRNA True 3877 mRNA 0.47 9 CI01000310 2947447 ~ 2977511 (-)