RNA id: TU3118


Basic Information

Item Value
RNA id TU3118
length 209
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2563
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15114629 ~ 15114837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagctccctgcccccctgggccctagtttaaaagattctcaatttctaTACActttcccaatgcattagccccccttctgttcagatgtagaccatccggtttgtacaggtcccatctatcccagaagaaggaccaatgctccataaacctaaacccctcttccctacaccaacatttcaaccacatgttaaactttctaatctctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3058 lncRNA upstream 84261 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 247931 14851752 ~ 14866698 (+) True AMCG00003690
TU2960 lncRNA upstream 693319 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 1035302 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1573475 13539972 ~ 13541154 (+) True G2336
TU3119 lncRNA downstream 868 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 13759 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 195484 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA downstream 195484 15310321 ~ 15318228 (+) True AMCG00003702
TU3193 lncRNA downstream 258358 15373195 ~ 15377637 (+) True G2619
AMCG00003695 mRNA upstream 18105 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003696 mRNA upstream 60258 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003691 mRNA upstream 109352 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003690 mRNA upstream 247871 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003688 mRNA upstream 497437 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003694 mRNA downstream 29785 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003703 mRNA downstream 140219 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003702 mRNA downstream 186243 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003705 mRNA downstream 219164 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003701 mRNA downstream 238641 15353478 ~ 15370866 (+) True AMCG00003701
TU2954 other upstream 694897 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1958002 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2072032 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3537300 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3623186 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 920826 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2566980 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3022918 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3031823 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4253356 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile