RNA id: TU3193


Basic Information

Item Value
RNA id TU3193
length 4419
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2619
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15373195 ~ 15377637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGATCAAATGAAACGAGCATAGAGAACAACAAAGGAATAACTGTACAGTTTTAACAAGAAGTATTGTTTTTAGAAGTGTTTCGACTATTTTTACAGTGTGTAGAAGGTAGATATCAATCGTTCCCTTTCCCTTTTGTGGAAAGGGGGGCTGTTAACTTTTGTCATTTTaacctttcccccccccctcccccccagccaGCTCCTGGTTTTAATGGGAGTTCTAGTCCAGTTTGGGGAGAGGGTTGGGGTGTCTgcacaaacattaaaaagtcatttttaataaaagaatTATGTAAGTTTGGTGATAACAGATCATTCTAGTACAGCAGGCATTTGTGTGCACTTACTCGCATTAAAGTATTATCTGTGAAGTGCTTCAAGAAAGATCCTAATCACATCTTGATGTGGGAGGTCCTCAGTTCCCCGTGTGTTCAGGAGccatttttctctgtctttaaaGCACTGGTCAATCCTTGAGAGTGTAGGTCTCCTCAAATGTTCCCTATCTTAGGACCTGGGAAGAGTGTTAGGTCAGTCACATTATGCAAATTGTGTTGAGGTGTAGAGTGAGGAAACTCAGGTGGGATGACAAACGCTTCACCCTTGTAGCCCCCCCACCCGTCATCCAAGGAGTGGAGTTCGAAACCGTGCTTTAAGGGAATGAGTCAGCTCTGATGAGTTATAGTCACTGGAATGTCTTTGGTGTCCAATAGAAAGTCTAGAGGTGACTAGCATAGAAAAATGGCTCCTTGGGGTTACTGGGTTGTTTGTGTCTCAGTATTATTGCTCTCTTCAGGGAAAAAATGGATAGTTCAGCAGCAGCATCACAATACACAATCATGGGCATGTAACAATCTTGGGTGAACGAAAATGGGATTTTCCTCGTGATATGGGCCAGACATACACTACTGAAACTCAGTGTTCACGATGCAGCTTCCCTGCTTCTGTGTGTTTCGACTGGGAAGCGCAGTGAGAGATTGGGGAGGGGAAGGTATGTACTGAGGCTGCTGGGAGATGTTTTCTTGAAACACTTCAAAATGACGCTGCAGTACTGGGTTTATGTTGaatttgctgctgctgctttgctGAGGAAAAGGGAAGACAAACAGATCTTCAGAGAAGCctgaatgaaaaacacacaacgcATTCATCGACCAAAGGGATTTATCCAAACTACAAACCGCATGACAAGTACATACAGAACAAAAGACTGCCATTACCAAGCAAAGGAGAACAAACTGAGCTGTGACTGACTGCTACAGGAAGCAGGGTTACGTCTGACTTTCTAGCTTTCTCTCCAGCTTAAGGTTAATTTCATCAGGAGGGCTTGAATGCAGTGGTCTATGTCTTGACAGTGTCAGTGACTCTCCCTGTAAACATCACAGTTCAGTGCCACCTCTTCAAAGACTTGAATTCGATTTGCCACACGGTGAACTCTGTATCCTGCTAGTCTTTCTCAGCGTGACGTTCTGTGTGCCCTTTGGACTcgtctgtgttgtgttgaacCTGGCTCCAGCCTGGGCCTGAAATTCAGGCTTGAATGAAGGAAGAGCAGTAGAAGTGATAAGCGAGTGCGATCAATTTCATTGCTTAACTGCCAGGGCTGAAGTGCTAATAGTGCACTCCTGTAATCTGTAGTGTTAGCCAATTTGTCCCTTTGACTTGACTCCTGGCACTAGGTAATTTCTCTTAAGAGGTTAATTAATCCTACCCGGAGTCATTAAACTGCTTTCCATCAGCGCAGACTAACAGTTAATTCTCCCGTTTCTCCTCTCATTCTGCACAATAATTTTCTATCGAGCGGGTAACGGAAGGAACACACCTCTGATATTGGTTGTGCTGCCTTTTTGTTGTCGGTTAATTTAAGTGTGCACTTACGGGATGATGATCTTGCTTACTATGACTGACTATTTGGTCATTGTGTAGCTGGGATTGAAAGCTCAGGCTGTAGCCGGGTTGATAACTGTAGATGGGCTAAAGCGGTCTTGTTATAGTTGTGTGCGTGGAACCGCAAAACAGACTCGGGCTTATTGAACACAGACGTCTGTAGACCTGTGAGTTTGAGACCACTTTGCAAATGATCTGGAATGACAGAATGCAAGCTTTTGATATTTAAATCTAGTACATACTAAGGGTTTAACCTCCGCTGGTTCCCGTCACTAAAATCTCCCTGGAGAGCGTTTCTAAGAGGACTGTATTACTGACCCAGCACCTTGTGGGGCGTTGACATGTTGCTGCCTAATTCCAGTCCAACtggctttgtttctgtttcaggttTAGGAAGAGTATGTAAAACATACTGTATTTATCCCTGACATTtttaaggtttgttttttgtttttgctctgtttttgtttctttgcgaAATGCCAGAAGGGATCTCATTCGTTAGCTCCCCTGCTAATGAGACTGcttgtatttttctctgtgaGCGAGACATTTGCTGACATCACACTACAGTCTTTTGTTGGCAGACTGAACTTAGCTTGGCACGATGTCTTGTTTAGTTTGATTCTAAGGACCGGCATCAGTTTGCTTACTGCTCAGGATCTTTTCACACACCCTGTACAATATCCGTCTTACAGCCTTAGATGTGCAGGGAAAaaatgaggaggaagagggagccacagtggagagaaagaaaacatgcagATTTCAGTTCAGTAAACTTGCAGTGTTTACCAGGGCTTTGAAAATATCTTGGGTGACGTTGCACTTTATATAAGGCTCTTATCTGTGTGGCGATCATCAAATCTGCTCGATAAGCCGCGGCTTGTGGATCATACTGCgggctttatttttcttccaggatCGTTTATTAAATAACATCGGGATCCCCAAGACGCACAGGCTGTGTGGCCTTCATAGACACCTGTAGTAATTCATGGTTCATCATCAGTTCATCAATTAATTCACATTCAAGCTGCTTCTCTGTTTCTTCAAATTGGGTTTGcttgcctttttgttttggctTGGACACAGTGCACAatggtttttaatcttttttttattattattattattatggtaaaTATGATTTCCTACTCCTAAATGTAACACTAGGCCTTGCTCAGTATTGCTCAGTATTgctcactgagacactgccaCCCATCCTTTGCTGTTGATAATCATGTACAATAAATGTTCATGTTTATTAGAGATCCAGATTAAGTGGGTGTTCCTGTGTGTTAAAATAGTTTTGGTCCTGTTGCAATGTAGAAACACCTGcatgtatattgtatgtgttcATGTCTTTCGTTGGCCTGTTTGACCCCGCTCTGAGCAGAGAAGATGGAAAACGCAAAATTCAGAATGGGGTATAAGGTGGATTTATTCTTGAATTGTATGAAAAGAAAGCATATGCATCCATTTTGTTGCATGTCAGCCTTCTCTGTCAGATACTCTCCTCAGGCATTGTCTAAGAAAGGGACGTCTTTAACCCTCAAGAGCAGTAACGCTTGTATGTACAATTAAAAGGTGTTTGAGAGATTTCAAACAGGCAGCTCTGGGGACGGCTCTGCTGCTAGAGGCTATGTGAGCAGTTCGACGGCTATCAAtggcttttttttcctcctaatCAGCAGGAAACCTACAAGGATCGATCGTGTGGCAGAATGACAGAGCAGTTTCTAGTGCTGACTATAGCCCTTTGGATGCTGGCACAGTATTACTCCTCCTGTGGtcgtttattttattgttttgtgctaATTTATACAAGGTCCTGAAATGCCATCTAGTGGACTGCTTGCATCTGTGCAGCAGAAAAAAAGGACGAGAAgagattcattcattttaacctTCTAATTAAACGAGAGAAGCTACAATTTGATATCTAAATATACTCGCATAGCTGGCTTCAAAAGCATAGCCCATATGCTGGTTATCTTGCTGCATGTGCATTCCgctgaaagtttaaaaataatatttttttgaaaaaggGATTTCTCAGCCATAGCAGTATTTTCTTGAATGCTGTAAATCTAGATCTTGGTATATAGTCTCCCATTATACTAGGCAAAATAAAGATTGCATTACTACTATATTTTTTCCAATCTCCTGGATAGTTTGTGAACTACACACGCTGTGGactggtgtgtgcgtgtgtgtgtgttcacccTCTGCAGTTCACAGAGACATATCAATGGCCTCCCGTCTCCCCAGACACCGACCAGAGGAGCACTAGGGCTATCTTTGTTAATGCCTGAATTTCTGTAAATAGAAACAtactcattattttttaatgcaaccttctcttttattttttaagcctaatttgtttattaatttattctgtatgTGTCTCCATTTTGTAACTTTGATTGTCTGTAGTGGTACGTTAATTTCATACCAGAAACCCATTAgagaataaaaactaaatattaaaaaaaaataataataaagttgatTTTGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3159 lncRNA upstream 54967 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA upstream 54967 15310321 ~ 15318228 (+) True AMCG00003702
TU3126 lncRNA upstream 242995 15128596 ~ 15130200 (+) True G2571
TU3119 lncRNA upstream 256223 15115705 ~ 15116972 (+) True G2564
TU3118 lncRNA upstream 258358 15114629 ~ 15114837 (+) True G2563
TU3217 lncRNA downstream 39339 15416976 ~ 15419869 (+) True G2641
TU3260 lncRNA downstream 526846 15904483 ~ 15904820 (+) True G2681
TU3280 lncRNA downstream 655071 16032708 ~ 16032935 (+) True G2698
TU3303 lncRNA downstream 703545 16081182 ~ 16084866 (+) True G2719
TU3309 lncRNA downstream 707503 16085140 ~ 16085992 (+) True G2721
AMCG00003701 mRNA upstream 2329 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003705 mRNA upstream 38877 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003702 mRNA upstream 55365 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003703 mRNA upstream 83619 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003694 mRNA upstream 216802 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003706 mRNA downstream 17176 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003711 mRNA downstream 348805 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003712 mRNA downstream 647234 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003713 mRNA downstream 693915 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003715 mRNA downstream 759209 16136846 ~ 16161082 (+) True AMCG00003715
TU2954 other upstream 953463 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2216568 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2330598 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3795866 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3881752 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 658026 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2304180 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2760118 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2769023 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3990556 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile