RNA id: TU3237


Basic Information

Item Value
RNA id TU3237
length 209
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G2661
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15509873 ~ 15510081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTGATGCACTCGAAGACATCGCAGCACTTGCCCGGAGTGCCGTCGCCGCGGGAGACGGCGTGGGGCGAACTTCCGGTGGCACACTGAGGGAAGCCGCACATGCTGGGCAGACACTCACACCTGGGGAGAAAGGGCAGTCAGCATCAGACAACCACTCGGCACATCCCCCCAAAGCAAGTATGATGCAGATCCCCAGATTCATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3213 lncRNA downstream 130892 15378758 ~ 15378981 (-) True G2637
TU3212 lncRNA downstream 131318 15378197 ~ 15378555 (-) True G2636
TU3188 lncRNA downstream 191663 15315396 ~ 15318210 (-) True G2615
TU3120 lncRNA downstream 393690 15115983 ~ 15116183 (-) True G2565
TU3021 lncRNA downstream 810636 14698959 ~ 14699237 (-) True G2494
TU3261 lncRNA upstream 394406 15904487 ~ 15904821 (-) True G2682
TU3278 lncRNA upstream 519343 16029424 ~ 16030186 (-) True G2697
TU3281 lncRNA upstream 522606 16032687 ~ 16032922 (-) True G2699
TU3305 lncRNA upstream 569318 16079399 ~ 16084866 (-) True G2720
TU3310 lncRNA upstream 575034 16085115 ~ 16085995 (-) True G2722
AMCG00003708 mRNA downstream 22672 15478494 ~ 15487201 (-) True AMCG00003708
AMCG00003707 mRNA downstream 53622 15419692 ~ 15456251 (-) True AMCG00003707
AMCG00003704 mRNA downstream 120952 15381456 ~ 15388921 (-) True AMCG00003704
AMCG00003697 mRNA downstream 338541 15161825 ~ 15171332 (-) True AMCG00003697
AMCG00003699 mRNA downstream 350556 15157494 ~ 15159317 (-) True AMCG00003699
AMCG00003709 mRNA upstream 5591 15515672 ~ 15519593 (-) True AMCG00003709
AMCG00003710 mRNA upstream 80541 15590622 ~ 15591023 (-) True AMCG00003710
AMCG00003714 mRNA upstream 532647 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003717 mRNA upstream 585065 16095146 ~ 16116740 (-) True AMCG00003717
AMCG00003716 mRNA upstream 665690 16175771 ~ 16181167 (-) True AMCG00003716
TU3027 other downstream 698542 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 1496852 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 2398745 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 2474384 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 3431721 12076038 ~ 12078152 (-) False AMCG00003625
TU3242 other upstream 5592 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 2432496 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 2636579 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3914882 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3933935 19444016 ~ 19444743 (-) True G3523

Expression Profile