RNA id: TU3242


Basic Information

Item Value
RNA id TU3242
length 1561
RNA type TUCP
GC content 0.55
exon number 4
gene id G2665
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15515673 ~ 15591730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGGTGGAGGAGGAGAGCCAGCAACTTGAGACGCAGGCACAGCAAATGCGCGACGGCAGGACGGCTCGTATCTGACCAGGCTTAGTCCACTCCAGCCGGCACCACAGCCACAGCAGGACAAAGACCGGGCATTGCCGGTGGGGCTGAGCAGAAACATCTCGCCTTGCCTGCCCACACCATAAAGACAGGGAAAGCAGAAAAGCCCAACAGAAACCCAACGCACAGGCGGATACATGACTGCAGAAGAGAAAGTTTGTCGTGGTGGGGAGAAGCAGGAACAAACTTTGTCCTGTGCCGCATAAACCATGCAGTGTCCTTCGAGTGTGGGAtaatttttgtcctttttttgttgttgttttttttggattGCTTTCCATTTGGTCGGCTTGCTCCTATTCTTGGGAAAGAAGCCGTGTTTGAGTTGACACATTACattctttccatttttgaaaaaaaaaagtttcacccaGCGGGGCAATGAAAGCGCAGACCTAACCAGCATCCTACTGGAACCGTGTacttgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgccatCTCTAGTGctacacttgtgtgtgtgtgagtgagtgagtgagtgagtgtgtgtgtgtggctggcATTGCTGTTGTTACTGTTGCGGAGgggcttgttttttgtttttgttttttgctggcGGATACATAATTACAAATGGCCTCTTCAAGGATGTACCTGGTTGCAAAATGTATGCTGCTCTCCCAGCTCCTGCTCCTGGTCGCCAAAAGCAGCCGGGCTCTACTGTGCCTGCCCTGCGACGAGTCCAAGTGCGAGGAGCCCCGCCACTGCCCCGGCGCCGTGGTGCCCGGCATCTGCGGCTGCTGCTCGGTGTGCGCCCGGCAGAGGAACGAGAGCTGCGGGGGAGTTTACGGACTGTACGGGACCTGCGACCGGGGGCTGCGGTGCGTCATACGACCCCCGTTGGACGGCGGCTCCATCACCCAGTACGAGGTCGGGCTGTGTGAAGATGAAAACTGGGGTGATGACCAGCTACTTGGATTTGAACCTTGCAATGAGAATCTGATAACGGGCTGCAACATAATCAATGGGAAATGTGAGTGCGACAGCATTCGGACCTGCAATAATCCGTTCGAGTTTCCCAGCCAGGAGATGTGTCAATCAGCGCTGAAGAGAATCGAAGATGAGAAGCCGGACTGCTCCAAGGCGCGCTGCGAGGTGCAGTTTTCACCCCGCTGCCCTGAAGATTCTGTCTTGATCGAGGGGTACGCACCCCCCGGAGAATGCTGTCCCCTGCCCAGCCGCTGCGTCTGCAACCCTGCTGGCTGCCTGCGGAAAGTCTGCCAGCCTGGCTATCTCAACATCCTGGTCTCCAAGGCTTCTGGGAAACCCGGGGAGTGCTGCGATCTGTATGAGTGCAAACCAGTCTTTAGTGTGGACTGCAGCACAGTGGAGTGTCCCCCTGTACAGCAGGTCCAGTGCCCAGCAGACAGCTACGAGACCCAGGTCAGGCTCACTGCTGACGGCTGCTGCACCCTGCCCACCAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3237 lncRNA downstream 5592 15509873 ~ 15510081 (-) True G2661
TU3213 lncRNA downstream 136692 15378758 ~ 15378981 (-) True G2637
TU3212 lncRNA downstream 137118 15378197 ~ 15378555 (-) True G2636
TU3188 lncRNA downstream 197463 15315396 ~ 15318210 (-) True G2615
TU3120 lncRNA downstream 399490 15115983 ~ 15116183 (-) True G2565
TU3261 lncRNA upstream 312757 15904487 ~ 15904821 (-) True G2682
TU3278 lncRNA upstream 437694 16029424 ~ 16030186 (-) True G2697
TU3281 lncRNA upstream 440957 16032687 ~ 16032922 (-) True G2699
TU3305 lncRNA upstream 487669 16079399 ~ 16084866 (-) True G2720
TU3310 lncRNA upstream 493385 16085115 ~ 16085995 (-) True G2722
AMCG00003708 mRNA downstream 28472 15478494 ~ 15487201 (-) True AMCG00003708
AMCG00003707 mRNA downstream 59422 15419692 ~ 15456251 (-) True AMCG00003707
AMCG00003704 mRNA downstream 126752 15381456 ~ 15388921 (-) True AMCG00003704
AMCG00003697 mRNA downstream 344341 15161825 ~ 15171332 (-) True AMCG00003697
AMCG00003699 mRNA downstream 356356 15157494 ~ 15159317 (-) True AMCG00003699
AMCG00003714 mRNA upstream 450998 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003717 mRNA upstream 503416 16095146 ~ 16116740 (-) True AMCG00003717
AMCG00003716 mRNA upstream 584041 16175771 ~ 16181167 (-) True AMCG00003716
AMCG00003722 mRNA upstream 620935 16212665 ~ 16222773 (-) True AMCG00003722
AMCG00003721 mRNA upstream 637927 16229657 ~ 16245607 (-) True AMCG00003721
TU3027 other downstream 704342 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 1502652 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 2404545 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 2480184 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 3437521 12076038 ~ 12078152 (-) False AMCG00003625
TU3879 other upstream 2350847 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 2554930 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3833233 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3852286 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 3852286 19444016 ~ 19506753 (-) False G3523

Expression Profile