RNA id: TU3309


Basic Information

Item Value
RNA id TU3309
length 853
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2721
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16085140 ~ 16085992 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatatatagtttacataaataaacatcattTGGTTGCTATTTTAAGAGTTGGTGGCTCAGCAGTCGTTGGGTTTGAAGTGGTCTTGCTTATAGCCTAACCTGCAGCCTGTAGAGAAGCACTCGGCCCACCCAGGCAATCAGTGGATGGAGGGGCAATTCAGTAAGCGTCTGGAACAAGAGCCAGTCgtcactgcggccccccaggagtCTAATTGAATCTCATTTCTCAGGGGAGTGGATCAGACCTCCGGCAGGGCCTGGAAGCGCATCCTTTCAGATGTGATGGAGAGGCCTGGGGGTATTaagtattgtattaattttaaatggaaaattatgCACCTTTACACAGATTTGTGCCAAACTGCACTTGACTAAtcttcacccccccaccccatcgcATCCCATCCCAGTTCTGTtgatgtaaaaacaacacatcgTGTGTGAggctcccacacacacacgctattCACATACAACATTCCTCAGTGCAGAGAAGGGATGCTTTGCCCACAGTGCCCCAGGGCTCAGAGCAGACCTGTACCCTGCGTGTTAAGAGTCCTTGTTGAATATGtgatcaaaacaacaacaaaaaaaaacaaaaaaaaataaaaaatttaagaaaaaagaaaatatatatatatatatggggaaaaaaaaaaagaaaatcactgtCGTATCAATTTGAAATAGTTAAACCAGTCCTATATCATTGTATCTCCTATTTCAGAATTTAGTGCCTTTTTTGGACAGTAGActgttctgtaattaaaatgtagtatatatatgctttttgtacagtttttttgtttaagaagacttttttttaaacttgtgtttattttagtattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3303 lncRNA upstream 274 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 52205 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 180320 15904483 ~ 15904820 (+) True G2681
TU3217 lncRNA upstream 665271 15416976 ~ 15419869 (+) True G2641
TU3193 lncRNA upstream 707503 15373195 ~ 15377637 (+) True G2619
TU3352 lncRNA downstream 143943 16229935 ~ 16231498 (+) True G2755
TU3409 lncRNA downstream 343042 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 507272 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 513066 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 782307 16868299 ~ 16934020 (+) True G2861
AMCG00003713 mRNA upstream 5825 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003712 mRNA upstream 47005 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003711 mRNA upstream 333279 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003706 mRNA upstream 686734 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003701 mRNA upstream 714274 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003715 mRNA downstream 50854 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003718 mRNA downstream 121855 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003720 mRNA downstream 172462 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003719 mRNA downstream 201670 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003727 mRNA downstream 329458 16415450 ~ 16427708 (+) True AMCG00003727
TU3283 other upstream 45500 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1665408 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2928513 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3042543 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4507811 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1595825 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2051763 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2060668 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3282201 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5463209 21549201 ~ 21549533 (+) True G3751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU398659 True 4455 lncRNA 0.42 4 NC_048568.1 40888241 ~ 40892813 (-)
eurasian perch (Perca fluviatilis) TU248133 True 1290 lncRNA 0.44 1 NC_053129.1 9327399 ~ 9328688 (+)