RNA id: TU332


Basic Information

Item Value
RNA id TU332
length 1229
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G279
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1840798 ~ 1843781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccATCTTTACCATACCCTCCCCCACAGTAAGACCATCtctaaaaaacattacaatacaatgctCTTAATAAATGACCAACAAccaaattttatttaattttccaaaaaATCATGTTAACAAAGTAAAATTACAGAAATCTTtcaccaaagaaaaacaaataaaacattaattctgaCTAAGAATATTAAGACTGATACTCTATATgctatgtttttactttttgaaaaaGCATAGAGAAGTCCATCATTATATGTGCTCATATATGTAAAGTCAAGACCCagtaaataagcaaatacaagCATGCCAGCTAAGATGCATATCtataatgctttcaaaacagaatCTAAGTTAAATCTTGTAATATAGACAATGCTTATTGATAAGCCTAAAGAGTTGACTTCAAGACCCTAAAAGCTTAGTAAGTGACTCCCAAACATCTTCTGCTTTCCAGTAACAGGCTATCAATAAATGCAATACAGCAGGGGTCCAATATGGAGACACAGATTTCATTGTCGTTTATACTGAATTTCAGGGCTTCAACAGAATTGCTTTCTTCTGATACAACTGAGGGTGGCCTCTTAGTTCTTTTAGTCAGATAAATGATACAGTGACACTGCAGACAAAGACCTCATTCTTTGCCTGTAGTGAGTAACTTTAGGGCTTTCTGCAGATTCTGTACCGCTGCGCTTACATCTTCATACTGCAGAGCACTGCCAGCATACTTGCAGTATTTCTGAGCCCTGGTGAAGTCTTCTGGTGTTAGACGAACGTCACCTGCTGGTTGGTGCTCAGCAATGAGGGGTCAACTGCAGGAATATTCCTGGGAAGAGGCACTGGCTTGTCTGTTTCTCCTTTGAAAAACGATAGAAAAGACACTCAGTTCTCTGCCAGCCACACACTATATTTTCAgcggaaaaaagaaaaaacaaacaaatctagATTCTTTAATGATCTgctgaaaaaacatttcagatgtattattttgagtATTCTCTAATATCTTAACAATTCTATTGAAGTTAATTGAATTACGATATTTACTtgaatttacatatatacattaataaaggacatcaacataaataatataatccaCTATTTGTCATGTATTCtcccaattaaaaaacacatttctttataCTAGTCAGATTTTAAGAGTTACATATGTTCCTTAGTCCTAACAATTTCTTTGTTCCAAATCATATGATCCTTACTTGAAATTATCCC

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330 lncRNA downstream 10723 1826497 ~ 1830075 (-) True G277
TU311 lncRNA downstream 125942 1714577 ~ 1714856 (-) True G263
TU305 lncRNA downstream 252537 1587817 ~ 1588261 (-) True G257
TU251 lncRNA downstream 682235 1142238 ~ 1158563 (-) True G212
TU225 lncRNA downstream 805116 1033660 ~ 1035682 (-) True G188
TU362 lncRNA upstream 183140 2026921 ~ 2027350 (-) True G306
TU378 lncRNA upstream 242677 2086458 ~ 2086758 (-) True G322
TU410 lncRNA upstream 503281 2347062 ~ 2347409 (-) True G345
TU451 lncRNA upstream 561862 2405643 ~ 2406084 (-) True G372
TU547 lncRNA upstream 1161591 3005372 ~ 3005681 (-) True G453
AMCG00003407 mRNA downstream 116216 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003404 mRNA downstream 585817 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003403 mRNA downstream 594744 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003402 mRNA downstream 624031 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003400 mRNA downstream 883629 945223 ~ 957169 (-) False AMCG00003400
AMCG00003416 mRNA upstream 227047 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003417 mRNA upstream 451669 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003418 mRNA upstream 486914 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003423 mRNA upstream 553995 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003424 mRNA upstream 564273 2408054 ~ 2415951 (-) True AMCG00003424
TU425 other upstream 553861 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 553861 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 593946 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 1550876 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2806990 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile