RNA id: TU3352


Basic Information

Item Value
RNA id TU3352
length 1520
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G2755
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16229935 ~ 16231498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaaatacaacatctatttatttttttccatgataCAACTCACATAGTCATAAGGGATGACAAATTACCCATCCTACCCTACGTTAAACCGGCAGTGCTCTGTACAgctctgtaaagtgctctgtggcagTGTCAGGACAGAGAAACTCTGCATGTCAGATATAACAGTGACACTCTAATCCAATTGTGGCTCATGTGGTTCAGCATTTCACTGCCACAAGATTGGTAATCCTGAAGTTTTCTCATACAGGCAGCCAAATCTGTATGGCAGTCAAACTCCAATGTCTAAAACTACTGTgcagtttataataatatatcataattataataaatgtaccCATCAATAACTGCTCTATTGCTTTATTGGTATTTTGGTGTTACAATAACATGCATTTGTGATGGAACTCAacttgtattactattattattatatacattattattattattattattattattattattattattattattatatatataatataatataatattatatatattattatattatattatatatattatatagtgcTCTATCCCTATCCCTtatcctaaccctaaccccaaaGTGCTGTTTGTATACAAAATCACCCGTGAGAGGAGCAGCAAaacagagGGGCCAGAGCTAATCTTTTGTAAGACTTGCTGCTTCTGAAGGTTAAAGAACTTTTCCCTTTTCATGGAGTTAATGTACTTAAGAGCCCAAGGGCAAATGGTTAGAAAATACATAATGgcatgtttgtatttgaaaacattacagcagtttattgtttgtttgtttcattttccttcCCCTTGATGGGGGTAAagtattttcattaaatcatcATGCAAagcaataaaagtaaaacacaaaaccttCAATTTTCCACAGAGTCTAACATGCGAACCCAACATGGAGCCTCTAGTCACCTAAATTggattttgttgtgtgtttaaaGTTCCCCTCTTGCTGTCTATGTCCAAGATCCCTCTGTTTCCAACTACTTCATGAAATTGATATCCCATAGTCCACTGTTCAGTAGCCAGTCCTGTTTGGTTGGcatctcttttctttcttggcTCATCTTTTATTTCAGACCCCATGTCTCCTCCTTGAGACCATTTCCACGAGTCTGTTGCATTTATTTGTCTTGGACTGGCTGTGATTTGTATATACTTAACATctacaaatgaaataaaatgaagaaatacattttcttgctCGATCAATTTTCCCCGGAGTCCTGCACGTCGAACATTGCCTGACTTTGACGACATCAGATGTCTGTGGGTGGGTTTATTATGTGCTTATCCAATAACTAGTCACGACACAGCTTCTCCGCAGTATTTGTCAATGTGTCTATTTCACCTTTTCCATGTGTGAACTATTATACTggcattaattaatcaaataataatattctcttGTGTCttgacaataaaaacaaataaacataacatttactAATTttagagtttatttttaacttgtgaaagacatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3309 lncRNA upstream 143943 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 145069 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 197000 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 325115 15904483 ~ 15904820 (+) True G2681
TU3217 lncRNA upstream 810066 15416976 ~ 15419869 (+) True G2641
TU3409 lncRNA downstream 197536 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 361766 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 367560 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 636801 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 809615 17041113 ~ 17042564 (+) False AMCG00003744
AMCG00003718 mRNA upstream 19658 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003715 mRNA upstream 68853 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003713 mRNA upstream 150620 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003712 mRNA upstream 191800 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003711 mRNA upstream 478074 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003720 mRNA downstream 26956 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003719 mRNA downstream 56164 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003727 mRNA downstream 183952 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003730 mRNA downstream 286608 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003729 mRNA downstream 315574 16547072 ~ 16569703 (+) True AMCG00003729
TU3283 other upstream 190295 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1810203 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3073308 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3187338 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4652606 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1450319 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1906257 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1915162 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3136695 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5317703 21549201 ~ 21549533 (+) True G3751

Expression Profile