RNA id: TU3373


Basic Information

Item Value
RNA id TU3373
length 2549
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2765
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16247935 ~ 16250483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGATCTGGTGAAGATTGCAGTGTTTCATGTAATACAGTAAGTCACACatattttccctcactgtatcagtGTTCCATTATTCTGCACCATTGTTCTAAAATATAGTGACTGGAATTTTTGGCAGAACACGAGGAGAGAGAAGACCTCTTCCCTTTCTACAAACacactgtgttttttattaataccaTCAGACATTTTCCCCACTAAAttaagaaatgtgcattttcagAGGCTCTGTATCGTTTACAAGCCCTGTGCTTGAAGCGGGCTGGTATGCAACACAACAGGGTGATGTACCACAATTTCTCCGTTTCTCAGAGTATCACCACGTCCCAATTCTCAATTCAAAAGAGTTATTTACCTGTGAGTATTTGTGTTATCACAATCCCTTTAATGGGCCTGAATATAATTTTGAGCACTCATTAGCCCCGgccctgtcatgtttatttttctgttacagCCGCTAAAAATACAGTCAGGTAGCACGCTGTATTTTCAGTGCCTTTATAGCtagactaaaaataaataagaaatagttTTAGCTTATTGCTTTCtggggagagaaagagcaaACAATGAAAGGTTCACAGCAGCGGGGAGGGGTTTTGCTGATTGTCTTAATTTCATGCTTTCTTAAATCAAGAAGATTTTTAACAGATTTCCTCATTTCTAGTGGAAGATTGGAAGATTCTTTGGTTCTGTATAGCGACTCAGTGTTCCAAGTTGATAACTTTTCAATTTTAGTAACTATTCAGTGAATAGTTTTGCTCTACAACCCAAAATACCTTTGTAGAGGTGCTGAGTGGGTTTGAAATGCCCCaatgtacatgtttaatagTATTTCTCCAAACCATTATGAAGCACTTAAGTTTTTAGTAGGAATAGGTAAACAAaggtattataaataaacaagcaaaaagaTCTGTGGTAGCATGGACTTGGTGTAAAGGTATAATTTTCACCTTTTAGACAATTTTCtcatttagaaatgtgtgtAATGAGAAGCACAGATGTTTATAGTTAGCTTTGTTGCTGGTAATTTCAGGGGGTGTTTATCTAATCTAAAGAAAGCAAACTTTGTCAGGTGTGATCACATCTTTGGAAATCATTGTACTGTTTTTAACTGAAGGTGCAAAAGAACAACCAACCCTTTTAACAAAATGAGACAAGAAGTATTAGAAAAACATACCAAGTGACTGCACTGTGGATCATTTTCAGTGCCCAATCTGAGACACTTAACTAAATAAATCTCCTCTGGCAGTTTAGGGATTACTGTGAGACATTATGAGGCACCAAGGGGTGTGTGTGACACTATCAGACGAGCCAGGATGAATgatgaaaatagtttttacaaCTAGACCGATATTTCCGACTGGAGATAATTTTCGAGATGATGAGATATATCGGTCGCTTACTGATGGTTAATTGTGTAAGATCACAAGTGCTATGCTTCTTGATATTTTCAGTGAGCCTAGAGCTGATTCACATATTAGCAAACACAGCGGATGGAAGGAGATAGGTATAGTGCATTGGTGAAACAGAGGCGATGAGGAGAGGTAGTGAATTCTGCTGAGAAATCATTCCCTTCTGTCCTCTGTTGAAAGAAGAGGGTACCTGTAAGTGCAGATGATGAGGAGAGACTGATTGGAGAAATTGAATGAGGAGAATGAGGAGCTTTTTAAGGGACCACTCCCTGTCACACCATTTTGCAGCCTGGAGAGAAACAACAGGTTCATCCAGTAAATCCACTAAGCAGAACAGTCAAGCACCTGGGAGCTGGGTGGGAACGAGAGCCAGAAGACCTCTCTAGGAACTGCAGGGCCCAGCTGTAACAGGAACATCAGGGAGTGCTGTCTTTACTGCAGACTCCAGCCATGACATCGTTCTGTACAATGatgtgttactgtgttaaatCTGTTAAAAGTATGTGCAGGGTGTTAACCGCTGAGCTCACCCTTGCATGaagaacacacagcacacaggtcTGCTGTTTTTCATACCTGACGATGACTCACCACATTTTTAGTTGTGTTGGGTGAGTGGGTAGCCATTAGAAGGAATCTATTTGCAGTAATGACAACTTAACAAGACAAAATATTCATTGTTTCTAACATAATAGTCACTATGGGgaacaatataattttataatatgaTAATTTTGCCATGATGGTGATGATTCTAAAACAAGAAATCTCTAAAACACTGTGTGTAGCCATAGGAGGGAATAGACTGGTTACACTTATAGCCAGAATaccataaaatgtgttatttttcttatattaactgttttatgttcatttaaattaaatgctggATTGTAACTGAAATACTTGAACACTAAATTACTGATTGTGATAATctactaaaataatgtatttctttctcacTTTGTGTGATTTCTTTCATGCAACATAGTCTAAACTGTAAGTtcaatgaaaaactaaaatacattaaaattttGATTAGTTTTATTCAAAATGGTGCTGACAAATCATgctaattgaaatgtaataaataatacattaaaattaaaaattaaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3310 lncRNA downstream 161940 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 163069 16079399 ~ 16084866 (-) True G2720
TU3281 lncRNA downstream 215013 16032687 ~ 16032922 (-) True G2699
TU3278 lncRNA downstream 217749 16029424 ~ 16030186 (-) True G2697
TU3261 lncRNA downstream 343114 15904487 ~ 15904821 (-) True G2682
TU3452 lncRNA upstream 335579 16586062 ~ 16586266 (-) True G2832
TU3456 lncRNA upstream 337586 16588069 ~ 16588293 (-) True G2834
TU3480 lncRNA upstream 357355 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 617849 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 617849 16868332 ~ 16870943 (-) False AMCG00003742
AMCG00003721 mRNA downstream 2328 16229657 ~ 16245607 (-) True AMCG00003721
AMCG00003722 mRNA downstream 25162 16212665 ~ 16222773 (-) True AMCG00003722
AMCG00003716 mRNA downstream 66768 16175771 ~ 16181167 (-) True AMCG00003716
AMCG00003717 mRNA downstream 131195 16095146 ~ 16116740 (-) True AMCG00003717
AMCG00003714 mRNA downstream 192282 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003723 mRNA upstream 1204 16251687 ~ 16258335 (-) True AMCG00003723
AMCG00003724 mRNA upstream 16417 16266900 ~ 16268503 (-) True AMCG00003724
AMCG00003726 mRNA upstream 41874 16292357 ~ 16300392 (-) True AMCG00003726
AMCG00003725 mRNA upstream 57750 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003728 mRNA upstream 178544 16429027 ~ 16442526 (-) True AMCG00003728
TU3242 other downstream 656205 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1436604 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2234914 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3136807 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3212446 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1692094 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1896177 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3174480 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3193533 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 3193533 19444016 ~ 19506753 (-) False G3523

Expression Profile