RNA id: TU3454


Basic Information

Item Value
RNA id TU3454
length 1442
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G2833
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16593264 ~ 16597369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTTTGGTGacgagagaggaaaaaaaaaaaaggtttgaaaaGTCTTCTAGTGAGGAGTCTTCCACCTCCATACCTTCTTTTGATTTTTGACCCAGTCACTGGAAGCGGTTGATGCCCAAACTTCTTCCTCAGACCCTTTAGCTTGGAGGCATCAGCAAAGCCATAGATCGCGGACTGCCAGGTCCCATCGTGAATGTGACCCCCCTTCGGACAAGAAACGTTACTCGCACACATCTACACAAACAGACTCCTCTGCTGCAAATGGATCGTGTGACCTATTCATTCAGTCTCAGAAACTGCAAAATCACAAGAAGGAATCTGAGTGGAGGAGAGTTTAGGACCTCCGACTCCAACCTACAATATATTCTGCAGGTTAATGACTGgttaataattgttaaatgaataatttgaGGTAAAGGGCTACATAAAAATCACTTTGAAGGAAGCCACTAAACATTTCTCAGAGTTAAAACTATacagaaaactttattttttattttttttggggggtggaggAAGAAACTTACCTCTGGCCCATTGCTTATGGTCAAGAAACTTTCCACAGCTGTCATTGTCCCTGCTTTAAATTGGTCTCTAGTGTAGATTACCCCCATGTCTGCAGGGATGGAGTCAAAACCACAGCTCCCAATAACATACACGCCCTTCTCCCTTGCTTCCTTGTTGTAGTTCAGCTGCATTCCCTCTAGAAACTAAAATAAGCAGACAAATACAGACATGcatgcatgtacacacacacatacacaatattcCTGCTTTGAAACTACCTTTGGGGGAGGGGAGACTGAATGTGTtaacatgcattaaaacaataaaaaagggatcacattattttaacacaactgcagcacaaaaccaaaataatgtcCCCGCAACAAGCGTCCGTGCTCCATGCACCATCCTCACTAATAAGGTAATCCAAAGCATACAAAATCCTCAGGTCAACTCTTCTGATGGAATGACACTGCACATCGAAACCTTTTGGACTCTCTTCCAACGTGTACCGACTGTACTTTATGATGATTCTCATAAACCTCGTCTGTTGACCAAAACGAGATTAATATTAATCCTACTTCTGCTCCTACATCCCACACAGTAACTCAAACACGCGAGAGCACAGGAACACAGCCCACCCAGCCTAAAGCAGTGACACACTGCGCTACAGACACTACACCTACCTGCGGCTCCCCACATATGTCAATGGCATGGGCTCCGTTCTCAACACAGGCCTTCACCATTTCAGAGTCCCCTTTGGCCCCTCGGCCGACGTCCGGGCCACCTCTTCCACCACAAACTGTCCGGTGAAACCCGAGGCCCCGAACACGATGATGTCGTAGGGTCTGCTGCTGGACCTGGAGGTCGCCATGGGGCCAGACGTGTGTTGCTCCGCCGTGCGCTGGACCGCGACTGCAGCCGGGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3409 lncRNA upstream 162709 16429034 ~ 16430555 (+) True G2797
TU3352 lncRNA upstream 361766 16229935 ~ 16231498 (+) True G2755
TU3309 lncRNA upstream 507272 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 508398 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 560329 16032708 ~ 16032935 (+) True G2698
TU3458 lncRNA downstream 1689 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 270930 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 443744 17041113 ~ 17042564 (+) False AMCG00003744
TU3591 lncRNA downstream 610666 17208035 ~ 17210041 (+) True G2945
TU3614 lncRNA downstream 656897 17254266 ~ 17256450 (+) True G2967
AMCG00003733 mRNA upstream 3765 16576388 ~ 16589499 (+) True AMCG00003733
AMCG00003729 mRNA upstream 23561 16547072 ~ 16569703 (+) True AMCG00003729
AMCG00003730 mRNA upstream 70678 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003727 mRNA upstream 165556 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003719 mRNA upstream 304562 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003737 mRNA downstream 54465 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003738 mRNA downstream 96201 16693570 ~ 16699348 (+) True AMCG00003738
AMCG00003739 mRNA downstream 250425 16847794 ~ 16850839 (+) True AMCG00003739
AMCG00003743 mRNA downstream 275274 16872643 ~ 16877245 (+) True AMCG00003743
AMCG00003745 mRNA downstream 418295 17015664 ~ 17029628 (+) True AMCG00003745
TU3283 other upstream 553624 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2173532 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3436637 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3550667 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 5015935 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1084448 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1540386 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1549291 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2770824 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4951832 21549201 ~ 21549533 (+) True G3751

Expression Profile