RNA id: TU3539


Basic Information

Item Value
RNA id TU3539
length 815
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G2903
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16996790 ~ 16997604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACGCCATGTTGACGTCACGCCACCccctcattaattaattgaatatatatacagtatctactgatttaaaatgaaaccagGAAAACTACAAACTAGCCTTCCAAAGCAATTTATCGGTAAGTCGCACTCTACCTTTTACATTAGCTTTATGTTATCTCTAGTGTATGTGATGTATACTTTTAAAAGTCTGAGATtgatgttaaacaaaaaaaaacttcataattttaaaaagcagactaCAGACAAGTCTGAAATTACTGTTTCTTTATCTTAATTCTCTTTTGTCGACTTTAAGTGGTGTTGACTTTATTTACTAATAAGCCTAATACAAGAGCATTTCATAAAAGGTTTTGTATCACAATGaagcaataaaataacttaattgtttaatacaGTAATCTCCAATAGCATACTCATAAAATACCCGCAAACGATGTGAACCCCCCCtcgaaaaaaagaaagttatgtCCAGTGTTATTTCTTCTTGACGTGTCTTGATGCTGCATGgtagtgttttgtattaaataactaaaattcTGTACTATTAATGCATAGGTCGGTATTTCAGTATTGGAGACagttgacatttttaatttccattccttccatatataaaacacatacacaatattGCTTAATATGCTGTTTGAAGTCCCTGTCTCTTTGGAATATAAAGAAGTGCTTTAACATCTGCATTGGTTCAATAAACGCTATCCCATGTACTAATTATATACCTGCTATCTTTGAGAGAGAGTTTGAACCCATAATGAATGGTATTTCGAGATCTATTACAGAATGTGGAATAAAGATGAg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3529 lncRNA downstream 125315 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA downstream 125847 16868332 ~ 16870943 (-) False AMCG00003742
TU3480 lncRNA downstream 380551 16607838 ~ 16616239 (-) False AMCG00003734
TU3456 lncRNA downstream 408497 16588069 ~ 16588293 (-) True G2834
TU3452 lncRNA downstream 410524 16586062 ~ 16586266 (-) True G2832
TU3538 lncRNA upstream 43833 17041437 ~ 17042549 (-) True G2902
TU3581 lncRNA upstream 142353 17139957 ~ 17140224 (-) False AMCG00003751
TU3620 lncRNA upstream 256667 17254271 ~ 17254765 (-) True G2973
TU3619 lncRNA upstream 260333 17257937 ~ 17259543 (-) True G2972
TU3865 lncRNA upstream 938236 17935840 ~ 17940712 (-) True G3170
AMCG00003747 mRNA downstream 2768 16993119 ~ 16994022 (-) True AMCG00003747
AMCG00003740 mRNA downstream 103911 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003741 mRNA downstream 115668 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003742 mRNA downstream 125317 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003735 mRNA downstream 345288 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003748 mRNA upstream 1176 16998780 ~ 17013774 (-) True AMCG00003748
AMCG00003746 mRNA upstream 46030 17043634 ~ 17047025 (-) True AMCG00003746
AMCG00003751 mRNA upstream 139644 17137248 ~ 17140382 (-) True AMCG00003751
AMCG00003753 mRNA upstream 207709 17205313 ~ 17229181 (-) True AMCG00003753
AMCG00003754 mRNA upstream 278038 17275642 ~ 17291950 (-) True AMCG00003754
TU3242 other downstream 1405060 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2185459 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2983769 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3885662 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3961301 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 944973 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1149056 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2427359 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2446412 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2446412 19444016 ~ 19506753 (-) False G3523

Expression Profile