RNA id: TU3591


Basic Information

Item Value
RNA id TU3591
length 647
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2945
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17208035 ~ 17210041 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAAGAGACAGGGACAGCTACCTGTAGGGCTTGATGATCTTCTCCCCGTAGCGCAGAGCGCCGTCCCAGTCCTGCATGTACAGACACACGCCCATGGCCTGGTACATCATGTGCAGCATGTACACGTTGGTTTCCTCGAACACGGCGCCCATCTTGTCCAGGCTGAGCTCACAGATCTCCAGTAGCTCGCTGGGGGTTTTGTAGTGTTTGGCTCTCCTGAACTCTTCAATGACATTGCGGGCGTATTTCACCGTGTCTCTGATCACCTCTGGCTTAGGAGGGTCACTCAACTTTCGGATTTCCACTTTTGCCTTATCCTGGGCAGAGAGTGACCAAATAAAAGACAGATAGTTAAACATTTCTGCCCGATGCACATTGCAAACAGACCTTTTGTTCATTTGCTTAATGATGACAATGAGAAAAGAACTAGAGTCCTAATGACGACTACGTACAGTGGTCACACGTCTAATAccacaaccccctcccccaaaaatGCATGCAAGCTACACCTTGGATTTGGTGCTACACTCTTTACAGTCACAGTTAAAGAAGTAGGAGTCCCTCAGCCGGTCGTTTCGGTCCTCTGATGGATACAGGAGATCAATGTAGCTGGTGAACACCTGGAGAGAAAGACAAGCAGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3513 lncRNA upstream 165471 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 274015 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 608706 16599058 ~ 16599329 (+) True G2836
TU3454 lncRNA upstream 610666 16593264 ~ 16597369 (+) True G2833
TU3409 lncRNA upstream 777480 16429034 ~ 16430555 (+) True G2797
TU3614 lncRNA downstream 44225 17254266 ~ 17256450 (+) True G2967
TU3977 lncRNA downstream 1228765 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 1334943 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1735541 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 1739713 18949754 ~ 18950254 (+) True G3373
AMCG00003752 mRNA upstream 2853 17161740 ~ 17205182 (+) True AMCG00003752
AMCG00003749 mRNA upstream 99757 17104264 ~ 17108278 (+) True AMCG00003749
AMCG00003750 mRNA upstream 103787 17078085 ~ 17104248 (+) True AMCG00003750
AMCG00003744 mRNA upstream 165441 17032570 ~ 17042594 (+) True AMCG00003744
AMCG00003745 mRNA upstream 178407 17015664 ~ 17029628 (+) True AMCG00003745
AMCG00003755 mRNA downstream 319356 17529397 ~ 17552735 (+) True AMCG00003755
AMCG00003759 mRNA downstream 366693 17576734 ~ 17577808 (+) True AMCG00003759
AMCG00003760 mRNA downstream 408383 17618424 ~ 17622439 (+) True AMCG00003760
AMCG00003761 mRNA downstream 419245 17629286 ~ 17640891 (+) True AMCG00003761
AMCG00003763 mRNA downstream 528201 17738242 ~ 17778447 (+) True AMCG00003763
TU3283 other upstream 1168395 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2788303 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4051408 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 4165438 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 5630706 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 471776 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 927714 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 936619 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2158152 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4339160 21549201 ~ 21549533 (+) True G3751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU109001 True 367 lncRNA 0.45 2 NC_035905.1 15961507 ~ 15963105 (+)