RNA id: TU3614


Basic Information

Item Value
RNA id TU3614
length 2185
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G2967
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17254266 ~ 17256450 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACcatttggaatttgtttttattttgcacaagcTTGCATATATACTGCACATACATTCAGTTCAGAGAAGATGGAAGGCACACAAGGCAATTGAACTACTGTATCTTGTAGGTGGTACAAAGCAAAGGTAAAAGTCTGGATAGTATACAAAAagcttaaaacacacaaaataaaataattttatcttccaaacaaaaccatcatagtatattttcagtttctttaattgAGTAGCTGCCAAGCTTATCTTGAAGCAAGAATTTCTGAAATTCTGTTGGCTACTTGCACTGAagtccccctccctctcttttgtCTTTCAGGAATCAGCAAGGGCTCCTTATTGTTTGATTCTACCAATTAATATTACAGTACATCCTTAGTTATAAAAAAATTGTACACCTTCATCAAATAAATTAGgataaattaaaccaataaattatgcaaaatccTCATAACAAattgacaacaacaaaaatccacaaTCAAAATGGCTAgctatgtatatgtatgaatgtgtttaatattttatatatatatatatatatatatatataaaacttatgAATAAACTGAGACATTGTCAGTTGGAATTACTGCACTAGAATCAAATAAGAGttctttaatacaaaataagcgTAATAATGCCATTTACAACATATTGCTAAATCATATGAAGGCAGTGTTCTCTCActttaatatttacatacacGTCAGGGCAAGTGGAAAAACCGCGTTCCcctttatatttctttaaaaccttcactgatttttttttgtctccccATCCCCCCAAAGTTTATATCCATctttacttctttctttttcctctttcttcccACTCACAAATCCTGTAGAATTCCACCTCTACAAAGTAAGAGATTGGCGAATGCAAAACCACTGgatatttaatttttccttcctgcccacccccctcctctcacagaaatacaataatttacagcattttgttaaaaaaaaaaaaaaaaaaaaacctggaaaaaaaaaataccaacaacatcatcaacaacaaatgCTATCTAGGTTTCAAGCAGTTTAGATCATTCAAGTCATTTGAGATCATGTCACCACTGGTTCAGAGGTTTCAGGAGAAAGATGCACAGTTGAAAGTTTGCCATAGTTCCAGCCCTTTAGTAAAAGAATCGTCAGCTTAAATTACCAGCAGGCATCAGACAAAAATCCCGTTGAAGACAGCAACTGAGTTCTTTCAACTGAacatataagtgcaatacacaGTAGTCTGTCCTGGTTTCCACTCATTCCCGAGGGAGGCTTTTCTATGACAACAGTTTAGAATCTGTCACAGGAGGTTTGCCCAGTTTGGGGCAGTTACagaacacagaaaaaacataaacaaaacaaagaaaaaaaaaaaaaagagagagaacggCTGGTTACAATCTCACTATGCAGaatctgctgtgctgtgctttttcCTCCCCTGTTGATTGTGACAACAAGGATGGTCTACTTCAGTTTGTAGTGTGGTTGtgtaataaaatcaaatctCCACCTCCACAGGGTAACTTGAAATGATGTTCACAGTCAACCAGCCCAAacgtttgattttctttcaacaaaaagcatatttttctttaaaggtaTGACTAAACGGATGTATTTGTTGCCAACGCGTATTTCTGTCCTGGGCACAGAGTGTGGGTGGAACTACAGTCTTCTCCTGGCCGGTGTGAGCTCAGTGCAGTATATATTGCATTGGCGAGTCTCCCCTGTCTATAATGAAAACACAGTAGTCTGACAGCAGCAGCTAAACAGGTATGAAGTGGTAGTGGTTACAAGAGTTCCCTCCTCCCAACTGGTCTCGTGTCACGTTCTCCCACAGACGGCTACCGAACCCCACCATAGCTGTTCACACTCCGAGGCACAAACCGCTGTAGTCACAGTAACTGTGCCAAACAGCCACCGATCCCTTCTTACAGACACCCCAGCATCACGCTTTCATTTTCCCCATTTCAAATCTGACCAATagaatataatatagtataatataatatcatataaaaaatgcaaataaaatcaaCCTCTTCACAAAACATAAGCAATTAATCTAAAATAGAAAACAGCATAAAtctaaagtggaaaaaaaatgtaatcacttcacacatgtatgtgtaagtacatgcatgtatgtatgtatatatcttt

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko05230 Central carbon metabolism in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3591 lncRNA upstream 44225 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 211702 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 320246 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 654937 16599058 ~ 16599329 (+) True G2836
TU3454 lncRNA upstream 656897 16593264 ~ 16597369 (+) True G2833
TU3977 lncRNA downstream 1182356 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 1288534 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1689132 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 1693304 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 1694802 18951252 ~ 18971124 (+) True G3375
AMCG00003752 mRNA upstream 49084 17161740 ~ 17205182 (+) True AMCG00003752
AMCG00003749 mRNA upstream 145988 17104264 ~ 17108278 (+) True AMCG00003749
AMCG00003750 mRNA upstream 150018 17078085 ~ 17104248 (+) True AMCG00003750
AMCG00003744 mRNA upstream 211672 17032570 ~ 17042594 (+) True AMCG00003744
AMCG00003745 mRNA upstream 224638 17015664 ~ 17029628 (+) True AMCG00003745
AMCG00003755 mRNA downstream 272947 17529397 ~ 17552735 (+) True AMCG00003755
AMCG00003759 mRNA downstream 320284 17576734 ~ 17577808 (+) True AMCG00003759
AMCG00003760 mRNA downstream 361974 17618424 ~ 17622439 (+) True AMCG00003760
AMCG00003761 mRNA downstream 372836 17629286 ~ 17640891 (+) True AMCG00003761
AMCG00003763 mRNA downstream 481792 17738242 ~ 17778447 (+) True AMCG00003763
TU3283 other upstream 1214626 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2834534 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4097639 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 4211669 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 5676937 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 425367 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 881305 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 890210 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2111743 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4292751 21549201 ~ 21549533 (+) True G3751

Expression Profile