RNA id: TU378



Basic Information


Item Value
RNA id TU378
length 301
lncRNA type intronic
GC content 0.51
exon number 1
gene id G322
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2086458 ~ 2086758 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttcacaccattctttgtaaaccctagaaatggttgtgcatgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacactcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttgattagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU362 lncRNA downstream 59108 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 242677 1840798 ~ 1843781 (-) True G279
TU330 lncRNA downstream 256383 1826497 ~ 1830075 (-) True G277
TU311 lncRNA downstream 371602 1714577 ~ 1714856 (-) True G263
TU305 lncRNA downstream 498197 1587817 ~ 1588261 (-) True G257
TU410 lncRNA upstream 260304 2347062 ~ 2347409 (-) True G345
TU451 lncRNA upstream 318885 2405643 ~ 2406084 (-) True G372
TU547 lncRNA upstream 918614 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 920210 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 999707 3086465 ~ 3111051 (-) True G464
AMCG00003407 mRNA downstream 361876 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003404 mRNA downstream 831477 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003403 mRNA downstream 840404 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003402 mRNA downstream 869691 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003400 mRNA downstream 1129289 945223 ~ 957169 (-) False AMCG00003400
AMCG00003417 mRNA upstream 208692 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003418 mRNA upstream 243937 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003423 mRNA upstream 311018 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003424 mRNA upstream 321296 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003422 mRNA upstream 340639 2427397 ~ 2438561 (-) True AMCG00003422
TU425 other upstream 310884 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 310884 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 350969 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 1307899 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2564013 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile