RNA id: TU3794


Basic Information

Item Value
RNA id TU3794
length 1429
RNA type TUCP
GC content 0.47
exon number 3
gene id G3108
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18146660 ~ 18152314 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCCTCTGCTGCCCCAAAAGCCTGCACAACACCACAAGTGAGACATGCTCAAGACACATGGACAGAAACACTCACAGACCAAGACCAATACTGTAGAAAAGTGCAGATCTACCACTGGAATTACAGCACCACCACAGGTCCAACACAGCCCAGGCAGGCACAGCGATAGAAAAAGTTGCATGATGGACCCGGATTTGAAATAACTGGATAGACCGATTAAGATTTGGATGAGGTTTTATACTGAACTGCCAACTCAAATAGCTTAGTATGAAATGCAAGTAGTGTTGCTTGCAATGCCTCATTGAATATAAAAGGGACATTGCAAAAGCTTTTGGGTGTTTAACATAACTTTCCATGGCTATCTCCACTCATGTATAACTGCTGCCGTTCCTGAAGAGACAGGAGGGGAATTCCCAGAGTCACaccattaaatgtaaatgttgaatacatacatttacatcacATCTACAGCAAAAGCAAAATGCAGTCAGTCATCTATATAAGAGTGGAGTATAAAAGGAAGCGAACAGGTCTCACCCAGCAGGATCCACAGGAGCCCTGGTCTCGGATCTCCTTGAGGGTGGGGCAGTTGGGCCACTGGTCCCGAGGGTCGAAGCTCTTCGGTAGCTTTATGTCATCAGCGTACTGCACCCTGCAGCGACAGAGGAGGAACGTGACACAGAACTGCATCAGAGGGCAAGAGGACCGCCGTGAGTGTGATCAGCATCAGATCAAAACTGCTCCAACGGAGAGGAGACCTCATGAACAGTTATTTATGACCTAGTTGAAGCTAAAATTTAAAACGTCATTCCTCTGAAGGGGCATTTAAATAAACCTGGGAAGTGTGTGTACAGGggggcagcacagcacagcaaatgGAAGGTTCCAGAACCTGTACAGCGCTCTAACTCACAGGACTAATAAATGTGATACTCCGTCTGCTGTACTGTTAAATCACACAGTTTCTTCAAATTAGGAAGCAAAAGACAAACCCccccaacaaacacaaaacatatatacatctgTGGTTCTTCAATAAAGCACAGATTTACAAAGttcacacaaaacacaggagGCAATCTGACAATCAGCAGCTAACAAACATCAACAAATCCTGGCAGCATTTTGCTCACAAGTCCTGCAGCACATGTGCTCAATCACACCCTGCCCGTCACCGTGAGGAGTGTGCCCTCCAGCTCTCACACTCACATCACTGGCAGTCTGGGGCCCTTCAGCAGAGTCCCACACAGAGTCTTCACATAGCTGAAGTCAGCATTGGGGAAATTGTGTCCATGTTAATCTTGTTGATGTAGTTCACAAGCTCAGGGGACAGGGGTGAGAGGTGTGGCCGGGCTCTCGACCCACACACAGCCGCCAGAACGCACAGCACAGCCAAACGCCACATCCTGTAATCGTGTAAGATCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 890210 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 936619 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1104096 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1212640 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1547331 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 286492 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 392670 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 793268 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 797440 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 798938 18951252 ~ 18971124 (+) True G3375
AMCG00003779 mRNA upstream 7286 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003771 mRNA upstream 176070 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003775 mRNA upstream 196521 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003774 mRNA upstream 207762 17933862 ~ 17938898 (+) True AMCG00003774
AMCG00003772 mRNA upstream 230597 17899908 ~ 17916063 (+) True AMCG00003772
AMCG00003786 mRNA downstream 41969 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003787 mRNA downstream 50123 18202437 ~ 18208797 (+) True AMCG00003787
AMCG00003785 mRNA downstream 124144 18276458 ~ 18279829 (+) True AMCG00003785
AMCG00003790 mRNA downstream 136586 18288900 ~ 18320263 (+) True AMCG00003790
AMCG00003798 mRNA downstream 195577 18347891 ~ 18348131 (+) True AMCG00003798
TU3792 other upstream 4027 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 462672 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2107020 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3726928 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4990033 13155060 ~ 13156627 (+) False AMCG00003655
TU4227 other downstream 1215879 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3396887 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3593536 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 3770322 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 5557924 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile