RNA id: TU3879


Basic Information

Item Value
RNA id TU3879
length 2237
RNA type TUCP
GC content 0.51
exon number 2
gene id G3181
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17942577 ~ 17944942 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTGTAGGAGACGGAAGGGCTGGATTTGATGAGGACGCGAGCCAGCGTCTGCACACGGCCACCCCAGCACCAGGGTGTGGGAATGAAGCGCTCAGCCACCACAGGGCAGTGCTGCTCCAGGAACACCCGGAAGCCATCGCTGCACACCAACACAGGCATCTGGAGCACAGGTTAGAGAGAGTGAGTCTCAGGTGTACCTGTAACCTGCGTTTCTCTAAAAGACACAGAACTGGAAGACACAACAGGCAAGACTGAGCAGATGGCACTGTGCATTTACTGCAGTGCTGGGCAGGAACCTGATCCTGGGTGCAGAGGTGCAAACCTATGGGTTTTCTAGGTCTGTTTAAAACACCTGGCACACTGTTTATAACCTTGGTGCAATGTTGAATTGCTtcaaatttataataatatattgcattgaTGTAGCACCTTTCGTGAAAGATGATCCCACAGCACTTTACAATTAAGAGGTATCTGACAACAGACACAGCCAGGCTTGCAGAAACAGGGCTGCCCAGGGCTGTTTTATTGCACAAGTATTCCAACCATAGAGAGGAGGGGTCAGCAAGTGTGGTCAattggggtgtgggggggtgtcaATCTACAAACACAGACTTCTCACTGTGGTCCCTATGTGAGTACAGCTGGGGCCACAGTAAGAGAGAGAATTTGGGGAAACATTGCATTTGTGAACGAGGACAGGCTGGGTCCTCTGCTCCTCCGCACATGACAAACACAACAAAGTAACTCCCGCCCTGCTTCCATTCAAAATGTAACTTTCATAGACGGTGAGCAGATTCCATGCAATCAATCATAAGTGACACACTATCACATTACTTACATTCTTTCCATAAACTTTAGTTTtaaagatatgtatttattatgttcaGCATGCTACAATgcagaacaatacaaaacatatttttttggtAGCTTTAAAAAGAAGGAAACAGGGGGGAGTTAGGGGAATGAGACTTGCTAAACGGTTAAGGCCCTCTGAAAACCTAGAAAGCAGCAGCAATCTCCTAAGTAAACCTGAGGAAAGCAGTGATTGTACGTGCACTGTAACTGGTCACAGGTGGAGTACTGCCCTCCACACCGACACTGACCTGCCCCTGAGAGCCCCACAGGTAGTACACGAAGGCCGAGACAGCGGCCAGGCCCAGCGCATAGGGCCTGCTCAGGTAGTCCGTACACAGTTCAAACACTTCATCGTGGATAACTTGCATGACCGACATGGCCCACATAATCACCAACAGGAAATTATAAAATAgctgaaagtgacaacaggttgGTTTTCTGAGATGGAACTTTTGGGATACACGGCTGGTTTACGCGTAAAACGACCGAGTTGTTACTTTTTCACTCCGACAGCCAACTGActgaaatgtgctttttctACAACAGGCGGTCCAGAAAAGGTTCACTAATGCAGATAGACGGGATagtataaatgcaatataacgAAACAGAAGGGCGCTTAAGTCGAGGTAGGGTGACTAAAAcgtgtatattattataatgttcaaataaaacagGGTTCCCATTATCCGGTCAACAGTGCTGTATGTTATCAAAAGCTACCGCCGGTCTGCCGTTTCCTATGTCACAGTACAACCAGTCTTGTAAACATTtgaatggatacatttaaatgaatagttGCATCACATTCGACATTAAGCAAAATGATCCCTTatcaattaaagttaatatagtagtagtagtagtactgtaAGTGTAGCAAAGCGGAAGTAGCGGTCCCGTCATACAGAAAACGGAGGACTAGGATCTTAACGCCCGTGTATTCAAATAAATCCGACCTTCGCTATGTACTTGACCACTTGTACCAGTTGCAGACGAAATTAAACGTATTTTTATTGCTCGCGAAATAGACACGAATACCACACGCAAACAATcgtttatacatgtatttgtaagGACAACACGAATGTAAACCGGCGATGTCAAACCAATACAGAATGACTATTCCGACCACTGCTCGCTAGGACCCACACATAGCTGCCCCCAAACCTGCCTTTACAAGAAACATCAACGGACTCGGATTGATTAATTGTTGTCCTTCTCCCAGCAACCTGGACGCTTCTATTATCTAACTTGTTTTCTCCGGCGAACTTGAAAATGTCACATAAAGATGTTCTTTGCGAATGGCGAAAAAACAAGGTTATTTTGTGAACTCGTCAATTGATACATCCAGGGATAAAAACGGAGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3865 lncRNA downstream 1865 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 683034 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 687812 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 802353 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 900028 17041437 ~ 17042549 (-) True G2902
TU3907 lncRNA upstream 190437 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 193870 18138812 ~ 18142681 (-) True AMCG00003784
TU3968 lncRNA upstream 464928 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 494159 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 600411 18545353 ~ 18545976 (-) True G3270
AMCG00003776 mRNA downstream 45662 17889983 ~ 17896915 (-) True AMCG00003776
AMCG00003770 mRNA downstream 65991 17875147 ~ 17876586 (-) True AMCG00003770
AMCG00003768 mRNA downstream 151520 17789939 ~ 17791057 (-) True AMCG00003768
AMCG00003764 mRNA downstream 157987 17779479 ~ 17784590 (-) True AMCG00003764
AMCG00003765 mRNA downstream 239351 17680446 ~ 17703226 (-) True AMCG00003765
AMCG00003777 mRNA upstream 25870 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003778 mRNA upstream 59229 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003780 mRNA upstream 160146 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003784 mRNA upstream 191591 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003782 mRNA upstream 202259 18147201 ~ 18148709 (-) False AMCG00003782
TU3242 other downstream 2350847 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3131246 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3929556 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4831449 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4907088 13034953 ~ 13035489 (-) True G2236
TU3909 other upstream 201718 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1480021 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1499074 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1499074 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5584577 23529519 ~ 23533882 (-) False AMCG00003893

Expression Profile