RNA id: TU3978


Basic Information

Item Value
RNA id TU3978
length 410
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G3266
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18439101 ~ 18439510 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAATCTATAATGCAGTTTTATTGTTGAATACTCTACTTCACAATTGTAATGCTTTCTCCTGTTAGTTTTAGCTAAATTTACTGCATCGAGCGTCTTGAGGGTAGTTTACAAGTTTCCTGTACTTTCCCCTATTTCCATCCGGAATCATATCCCTTTTCTCTCGACTCCGCTGATTTCCTTTTTCCTTGCGCTGCGGCACCCTACTCTCCAAATCGCTCACTCGCAGTCCAAAAGATACACGTACACGCACTTTCCAAAAGCTGCTTCTTTTCCCTGTAGACTCATCTGTTTCCCCATCCTGTTATCTCCCTTCACATTCTCGTCAatcctttgttttctcttgcCTTCTCTTAGCGCTTTTTGCGCTCTGTCGGTGTGAGTGAAGCGGCTTTAAGCGCTGcccgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3968 lncRNA downstream 21035 18409870 ~ 18418066 (-) True G3257
TU3907 lncRNA downstream 296420 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 296420 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 498389 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 1179558 17257937 ~ 17259543 (-) True G2972
TU3984 lncRNA upstream 105843 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 436072 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 510262 18949772 ~ 18950252 (-) True G3374
TU4124 lncRNA upstream 606297 19045807 ~ 19046205 (-) True G3395
TU4131 lncRNA upstream 637946 19077456 ~ 19077864 (-) True G3402
AMCG00003796 mRNA downstream 1141 18435287 ~ 18437960 (-) True AMCG00003796
AMCG00003794 mRNA downstream 54349 18321860 ~ 18384752 (-) True AMCG00003794
AMCG00003792 mRNA downstream 151949 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003793 mRNA downstream 163644 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003791 mRNA downstream 212179 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003801 mRNA upstream 243872 18683382 ~ 18690727 (-) True AMCG00003801
AMCG00003810 mRNA upstream 344138 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003806 mRNA upstream 440025 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003807 mRNA upstream 453254 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003811 mRNA upstream 492254 18931764 ~ 18937964 (-) True AMCG00003811
TU3909 other downstream 286720 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 494159 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2847371 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3627770 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4426080 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 985453 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1004506 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1004506 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5090009 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5090009 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile