RNA id: TU4075


Basic Information

Item Value
RNA id TU4075
length 1664
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G3354
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18875582 ~ 18878573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taTGATTTAAATCTCCACCCACagtaatatcaatttaaaaaaacaacaactctcacatttccttcatttttttttctttttttcctcatttttttttatacagttatACAAATACACTTATCCTGTGTACAATTGTTTGGCAAATTATATAATCAGTCTTTACATAGGTAGGGAACATTTACTATTGAGCATATAGAAAGCATTAGAAATgtgtgtacaaaacaaatatgcacaaagaaataatatatactcttgccataaattatcaaaataCAGTATTGCAACAGTCCCAGAAGCTTTTTGAAAACTCTTTGACATGTATTTACTCTTCTCCACACTTTCCCACAGGACTGCCATGGGATTCAGAGTTTGAGGACTATTTTtgcagaaatacataaataaaaccatcctTTTTCAGgcagaaaaatatgaatgaagaCACATACACATTGCACCCTGAAACgagtaataaaaacagtaactttcttccttttcttaaaGTCTGGTGCACATGAAGAGTTGATCAGCCACTTTACAAGGGAAggatttatttacaaaaaagtaatatttatataaaaagattattatatatatatttttaaacagtggtTAATTTGTCTGCCTCAGGTTAGAAGGTGCTCAATAGAAATCAATTTGAGACTTGAAAGTCCTGCATTTACAAATTGATACAGCGCATAAAAAATGTCATCGACTAACACGTCCCGTGTACGGACGGCACTACAAAGCCTTCTGAAGATGCAGACTTGAACTGAATGCCTTCATATTGGACTAACAAAGGCAGGTGAgtttattcattgtatttagCAGCTGGTTATATCAGCAAATTAGAACgactttacctttttttttcactaGTGGGACCCACCAGTGCTTTACAAGGCTGCTGAAATATGAAGGTTAAATAATAGCAACAAAccgcaaaaacaaataaaaacaaaacagggttAAACCAAAGCACCAttgataaaaggaaaaaagtgtcaAAAACTGGTTCAGCAGTAATGGTTTAGCACCAAAGTTGTTGTGCGTTGAGGAGTCAGAACTGGTCCAGCAGCTGGCGGAGATATGGCGCCTTAGCCAGCTGGCGGCTCACCCGGGACAGCTTGTACAGCACGGGGCAGTCGAGGGAAATGCACTGCACCTGGCGCTCGCCACTGCCCGTGCAGTTCTGGCAAATCTGAAACGACATGTTCATTACTGAAGTCAGCTACGTCCTCCCAGGGACCTCAGTACCAAAGatttcttcttaaaaataaaaacattgcaagcTGTGTTGCTGAAGAACAGGGAACGCTGCCCCACTCTGCCGTGCCCCGCCAGCCAACGCCTACCTTGAGCAGCTGGTCCTGCTGGCTCTCCCAGAGGCGGATGTCCTGGCTGAGGGTGACGGCCACGCGCTGGGGCTCCCGGCGGCAGCGGCTGCACACGCCCAGCTGGGTGAGCTCGTCACACACCGGGCAGTGCAGCGTGGTGAAGTACTGAGAGATCGTGCCCTTGCGGCCCGCCTCGTCCCCCCCTGCTGTGGAGCAGGCCTTCTGGATCTGCGTGGGCAGAGCACAGCGCCCGCTCAAATACACAAACTGACACTGGCACAGGGCTGGTTTTCAAAGCAGATTACAAGCACGGCCAAAGAAAGTAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3984 lncRNA downstream 329606 18545353 ~ 18545976 (-) True G3270
TU3978 lncRNA downstream 436072 18439101 ~ 18439510 (-) True G3266
TU3968 lncRNA downstream 457516 18409870 ~ 18418066 (-) True G3257
TU3907 lncRNA downstream 732901 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 732901 18138812 ~ 18142681 (-) True AMCG00003784
TU4098 lncRNA upstream 71199 18949772 ~ 18950252 (-) True G3374
TU4124 lncRNA upstream 167234 19045807 ~ 19046205 (-) True G3395
TU4131 lncRNA upstream 198883 19077456 ~ 19077864 (-) True G3402
TU4132 lncRNA upstream 200861 19079434 ~ 19079665 (-) True G3403
TU4135 lncRNA upstream 206131 19084704 ~ 19086692 (-) True G3405
AMCG00003810 mRNA downstream 90255 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003801 mRNA downstream 184855 18683382 ~ 18690727 (-) True AMCG00003801
AMCG00003796 mRNA downstream 437622 18435287 ~ 18437960 (-) True AMCG00003796
AMCG00003794 mRNA downstream 490830 18321860 ~ 18384752 (-) True AMCG00003794
AMCG00003792 mRNA downstream 588430 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003806 mRNA upstream 962 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003807 mRNA upstream 14191 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003811 mRNA upstream 53191 18931764 ~ 18937964 (-) True AMCG00003811
AMCG00003809 mRNA upstream 65522 18944095 ~ 18948660 (-) True AMCG00003809
AMCG00003808 mRNA upstream 72679 18951252 ~ 18971095 (-) True AMCG00003808
TU3909 other downstream 723201 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 930640 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3283852 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4064251 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4862561 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 546390 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 565443 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 565443 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4650946 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4650946 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile