RNA id: TU4091


Basic Information

Item Value
RNA id TU4091
length 204
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G3370
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18945582 ~ 18946131 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTAGCTCCTCAAGTAGATCTTCCCATCCAGGGCAGTGAAGTGCAGAACATGCTCCAGCCCAGCCAAACGTATTGAGGGTACCGTTGGCCCTctgaaaaaaACCTGTTAGAAGACTCTTCAGCTTTTTGAGTTCATTATCTGTTTCAAAGGAGTCGCCGGTAAATACTAGCAAGGGTTTTGTTCCTTCAGGACACTTACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3983 lncRNA upstream 400044 18544984 ~ 18545538 (+) True G3269
TU3977 lncRNA upstream 505916 18438806 ~ 18439666 (+) True G3265
TU3614 lncRNA upstream 1689132 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 1735541 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1903018 17041113 ~ 17042564 (+) False AMCG00003744
TU4095 lncRNA downstream 3623 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 5121 18951252 ~ 18971124 (+) True G3375
TU4120 lncRNA downstream 138840 19084971 ~ 19086715 (+) True G3391
TU4215 lncRNA downstream 337864 19283995 ~ 19285806 (+) True AMCG00003828
TU4235 lncRNA downstream 478876 19425007 ~ 19425344 (+) True G3496
AMCG00003802 mRNA upstream 67047 18832112 ~ 18878535 (+) True AMCG00003802
AMCG00003805 mRNA upstream 136974 18807322 ~ 18808608 (+) True AMCG00003805
AMCG00003803 mRNA upstream 145638 18784411 ~ 18799944 (+) True AMCG00003803
AMCG00003804 mRNA upstream 165822 18701643 ~ 18779760 (+) True AMCG00003804
AMCG00003799 mRNA upstream 262849 18670724 ~ 18682733 (+) True AMCG00003799
AMCG00003813 mRNA downstream 56925 19003056 ~ 19003858 (+) True AMCG00003813
AMCG00003814 mRNA downstream 70874 19017005 ~ 19031747 (+) True AMCG00003814
AMCG00003812 mRNA downstream 127661 19073792 ~ 19084953 (+) True AMCG00003812
AMCG00003816 mRNA downstream 186852 19132983 ~ 19138200 (+) True AMCG00003816
AMCG00003815 mRNA downstream 222635 19168766 ~ 19180512 (+) True AMCG00003815
TU3794 other upstream 793268 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 802949 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 1261594 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2905942 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 4525850 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 422062 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 2603070 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 2799719 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 2976505 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 4764107 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile