RNA id: TU4098


Basic Information

Item Value
RNA id TU4098
length 481
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G3374
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18949772 ~ 18950252 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaCCAGACATCTCCAGGAACAACGTcacctatgggcacaaacccaccttcactggacgtgatttcctgcaggACAGGAATGTCGGTGTTCTGCCATTGAAGAGCgtggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgagggctagggccattcccccagaaatgtccgggaacttgcaagtgccttggtggaagagtggggtaacatctcacagcaagaactggcacatctggtgcagtccaggaggaggagatgcactgcagcaCAGATACTGACTGTCCCTTTGTTCacggacacattattccatttctgttagtcacatgtctgtgaaacttgttcagtttatgtcttagttgttgaatatttttatgtgcatacaaatatttacatgttaagtttgctgaaaataaaagagagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4075 lncRNA downstream 71199 18875582 ~ 18878573 (-) True G3354
TU3984 lncRNA downstream 403796 18545353 ~ 18545976 (-) True G3270
TU3978 lncRNA downstream 510262 18439101 ~ 18439510 (-) True G3266
TU3968 lncRNA downstream 531706 18409870 ~ 18418066 (-) True G3257
TU3907 lncRNA downstream 807091 18135379 ~ 18142681 (-) False AMCG00003784
TU4124 lncRNA upstream 95555 19045807 ~ 19046205 (-) True G3395
TU4131 lncRNA upstream 127204 19077456 ~ 19077864 (-) True G3402
TU4132 lncRNA upstream 129182 19079434 ~ 19079665 (-) True G3403
TU4135 lncRNA upstream 134452 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA upstream 134728 19084980 ~ 19086692 (-) False G3405
AMCG00003809 mRNA downstream 1112 18944095 ~ 18948660 (-) True AMCG00003809
AMCG00003811 mRNA downstream 11808 18931764 ~ 18937964 (-) True AMCG00003811
AMCG00003807 mRNA downstream 37258 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003806 mRNA downstream 60560 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003810 mRNA downstream 164445 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003808 mRNA upstream 1000 18951252 ~ 18971095 (-) True AMCG00003808
AMCG00003817 mRNA upstream 138946 19089198 ~ 19098312 (-) True AMCG00003817
AMCG00003819 mRNA upstream 169563 19119815 ~ 19131852 (-) True AMCG00003819
AMCG00003820 mRNA upstream 192667 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003818 mRNA upstream 202364 19152616 ~ 19169651 (-) True AMCG00003818
TU3909 other downstream 797391 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1004830 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3358042 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4138441 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4936751 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 474711 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 493764 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 493764 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4579267 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4579267 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile