RNA id: TU410


Basic Information

Item Value
RNA id TU410
length 348
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G345
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2347062 ~ 2347409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcccagctgccttgagatcattaacaagatgctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgtaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcatgtccctgacatccttgcacagctctttggtctttgccatggtggagagtttggaatctgattgatttattgcttctgtggacaggtgtcttttatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378 lncRNA downstream 260304 2086458 ~ 2086758 (-) True G322
TU362 lncRNA downstream 319712 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 503281 1840798 ~ 1843781 (-) True G279
TU330 lncRNA downstream 516987 1826497 ~ 1830075 (-) True G277
TU311 lncRNA downstream 632206 1714577 ~ 1714856 (-) True G263
TU451 lncRNA upstream 58234 2405643 ~ 2406084 (-) True G372
TU547 lncRNA upstream 657963 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 659559 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 739056 3086465 ~ 3111051 (-) True G464
TU609 lncRNA upstream 848496 3195905 ~ 3211877 (-) True G500
AMCG00003418 mRNA downstream 10002 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003417 mRNA downstream 43649 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003416 mRNA downstream 258913 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003407 mRNA downstream 622480 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003404 mRNA downstream 1092081 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003423 mRNA upstream 50367 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003424 mRNA upstream 60645 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003422 mRNA upstream 79988 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003426 mRNA upstream 160149 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003431 mRNA upstream 326749 2674158 ~ 2725919 (-) True AMCG00003431
TU425 other upstream 50233 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 50233 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 90318 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 1047248 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2303362 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile