RNA id: TU4101


Basic Information

Item Value
RNA id TU4101
length 2947
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G3375
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18951252 ~ 18971124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACGCCCGTTCCACAGGTGcgtgttcattaattgtttatggttcattgaacaggcatagtttaaaccctttacaataaagacctgtaaagttatttggaatTTTACAAAAAGAGacgtttattttttgtgtggagTATACATACTATACAGATCTTTGACTATGACTTGCAAGAACTCTTATTTAAAGACATAACTATTTTTAAGCCTGCTCCTGGTTAAAGAGAATCAAATTAATTAGGACCAGTGCTGTGCACTCTGCATAGGCGAAATGCAAGAATCCGGGGAActtctttaaataaagtaaaacaacatAGAAAGCAAACTCATTTATTAAAGCATCAAGCTCATGGTACAGATATATTTTCGCACATCTTAACCAACCAAGGAAGAGcaaaaacagaatttaaacacCAAAGTTTCCCTTCAAAGCATCCCGACACAGTCCTGCAACGGCACCTATTAACCTATTGTTATCGGAGGCGTGTAATAATTTCCGCCTGAATATCCACCACACACTATCAAggggggatttttttattttggtaaactCCATTCTTACCACCCAACTTGTGAACAAAAATCCCCCAGTCATTTggaacacttaaaataaaaattacagaagaaaaaaattggtCCGCAGTAAAAatgcttgtttcttttttcagtaaaaaaataaaaataaaataccaaaagtTAAAGCAAATGACCTAGttttatagaagaaaaaaatgttccAAACTAGAAGACCCCAATCACTTTGTAATgggaaattaagttaaaaaaaaaaaaaatccataattgTCACCTCAAAGATGTTTTTGGAGAGGACAGGTGCCAATACCTTTAACCAATTACCTCAGAGCTCCTATTAGTGTGGCTGCTGTAAAATGTTTGGGCAGTTTCCCGTAGGGGTTCAACTTGGCAGCCACAGCAAGGACCATTCTTAGGGTTGGTCCTTAGGAAATACAGACCCAAGTAAGTCAGTTGACTGCACACTTTActggtgtcttttttttttttttttttactgggtCCTTGCTTGAGCTGCAGGTGGGTTTCAAGTGGTCCTTTACAGTAGAAATCAGTAATTGAGGCAGTAATTTGAATCTCTGCTCATTCAGCAGTATACTCTTATTGTTTTTAGGAGCTTTCTTTAACATCCCATAAGAAactcaaaacaaagaaaattaaaacataaaagttaGCTATAGTGCTGAAAGTGGTCCTGGTTTTTTTGATACAGTATTGAAGTCACCTGCAAGCACCTGTTACTTAGGTCAGATCAATGTATGCGATTCTGGTAGAAGCAGAAGCATTTTGgattcataattaaaaacattgattcACTGCCCAACATCATTAATTATGACACCATTTAATCATTCAATAAACACCAGAGTCAGTGTATTTAGGATTTTCTTTAAGCACTATAGTTTTACATGGCAAGAAATGTAGTTTACAAGCACTGTCCAATTCTTAACCatggcaaagaaaaaaagatcaaGTTCAATTAAACCATTACCAGAAGAACCCCGTCCCATTATGGTAATTACAGCTGACAAAACGTCATTAAGATTTAGCACATTACCTTGTATAGGAGGAACAGAACGCAGCGAACAACACTTTTGAGCAATACAGCACTAGTAGTCACATGCACCACAATGTCACAGGATTTTTCCGTCACTGAACAAAGGGCATTGATGCTGCTCCGAAAACTGCAATGCAGTCACATTTTGGACCAATTCACTGCAGAAACATCTGttcacaattaaattaataaagtgacAGTTTATGCAACACTTATATGTAGAATGATCCGGGATGACCCTGGCATGCTCAGATCAGTGTGCGTCTATTGTATGGTTACCAATTtctctacaaaaaaaaaatatatatatcgttTAAATAAACCACCTCTCTAAGCAAAGAATCTAATTCATTACATTCAGTCAGTCCAGCACGGCGCTACTGGGGGAGCTACACACAATGTCAAGCACCATTCTCTGGCTGCAGTGTCATTCATGTACAATCACGGTCTCACTACAAAGGGGAAATCACGCTGGTAGATTGTTCTACTCCAGGCCACATTACTGCATCAGCTCAGACTAACACTTCCTTGGCATTTCCTCCTGCTTACCTGAAACCACAGATCTAGGTATTTAAGGTGACTAACATGCTATTGACTAAATATTACATAGACCTTTTAATGTAGGTCTTCTAATCATTACCAACTTTTCAATCAAGGTCCATCTTCGGTTAGGGAGTACAGCATCCacaaattgcaaaatattaGGTATGTGTAGTGAGGCTTTATAATCTGGTTCGGTGCTCTAAATATCAACCAGTCTTTTATTCTTGTATCCCAGTTTTACCCAACACCAGTGAAACTAAGCCTGGAGTGATCTTGCCtatgaaaaaacaattaaagtctGCCGTACACATTGCATTGACTATTTCTATTTGAGTTAAGATGCAAGGTCAGATTTTCTATTAGTATACAATACCATAGGAATAACAAATTgtagtcatttaaaaaatactcatgatttttttttttttttttttatttattttttaatatatattcatctTGTACCCGTGTCGCACTCACCTCGGGATGTTGCGGAGGTCCCCTGTTCCTTTGGTCTCATCTTGCCGGGAAAACCACACCTCCAGCAGCTTCTCGGTCCCCTCGAAGAAGTGTGCACCGTTCTCTTCCATCGTGAGACAACAGACACCGACAACAGAAATTATacgttggttttgttttccaaattcaGTAAATCCTAGTTTGAGATTTATAACTTAAGATTTGTTTGTACAGTCCTTTAGCAATCCAGGTGTCTTTGCTTGATTTTACCGTCTTCCCTTTTGCAGAGAATACCGTTTAGCGAGCGCTAGCTAATATCGCCGGCCATACTGTGTAAAGCCAAGATGCCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4095 lncRNA upstream 998 18949754 ~ 18950254 (+) True G3373
TU4091 lncRNA upstream 5121 18945582 ~ 18946131 (+) True G3370
TU3983 lncRNA upstream 405714 18544984 ~ 18545538 (+) True G3269
TU3977 lncRNA upstream 511586 18438806 ~ 18439666 (+) True G3265
TU3614 lncRNA upstream 1694802 17254266 ~ 17256450 (+) True G2967
TU4120 lncRNA downstream 113847 19084971 ~ 19086715 (+) True G3391
TU4215 lncRNA downstream 312871 19283995 ~ 19285806 (+) True AMCG00003828
TU4235 lncRNA downstream 453883 19425007 ~ 19425344 (+) True G3496
TU4287 lncRNA downstream 741679 19712803 ~ 19713057 (+) True G3534
TU4289 lncRNA downstream 754203 19725327 ~ 19725709 (+) True G3536
AMCG00003802 mRNA upstream 72717 18832112 ~ 18878535 (+) True AMCG00003802
AMCG00003805 mRNA upstream 142644 18807322 ~ 18808608 (+) True AMCG00003805
AMCG00003803 mRNA upstream 151308 18784411 ~ 18799944 (+) True AMCG00003803
AMCG00003804 mRNA upstream 171492 18701643 ~ 18779760 (+) True AMCG00003804
AMCG00003799 mRNA upstream 268519 18670724 ~ 18682733 (+) True AMCG00003799
AMCG00003813 mRNA downstream 31932 19003056 ~ 19003858 (+) True AMCG00003813
AMCG00003814 mRNA downstream 45881 19017005 ~ 19031747 (+) True AMCG00003814
AMCG00003812 mRNA downstream 102668 19073792 ~ 19084953 (+) True AMCG00003812
AMCG00003816 mRNA downstream 161859 19132983 ~ 19138200 (+) True AMCG00003816
AMCG00003815 mRNA downstream 197642 19168766 ~ 19180512 (+) True AMCG00003815
TU3794 other upstream 798938 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 808619 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 1267264 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2911612 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 4531520 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 397069 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 2578077 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 2774726 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 2951512 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 4739114 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU775833 True 418 lncRNA 0.44 2 NC_048572.1 18709194 ~ 18714820 (+)