RNA id: TU4124


Basic Information

Item Value
RNA id TU4124
length 399
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G3395
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19045807 ~ 19046205 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTTCTCCCCACCCCTGTCGCCAGTGCGGGGCCTGTCCCGACGCAATCTCTTACCGTCTCCGCCGCCGCTCCCCGGGCCACCTTCAACACCCGAGACACCGCCACCGAGTCTCCGCAGGGCCGGGGTGCTGTCAGAGACGCGGGGAGGAGGAACTTGAGGAAGGGGGTATGGAGAGCACCCTGGCCTGCCGTGCGGTGGTAggagccggggggggggggagagcaCGCCGCCGCTCCCCGCTGCTTCAGAGTCTCGGGGAAATCGTTTGACAGTTcccctgctttttttttctctctctctctctttactcccccccttatttttttttcttttcctttctatCTTCCAAAACCGATACGAATCAAAATACTGTCACACAATATGGCGGCCGCGCTAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4098 lncRNA downstream 95555 18949772 ~ 18950252 (-) True G3374
TU4075 lncRNA downstream 167234 18875582 ~ 18878573 (-) True G3354
TU3984 lncRNA downstream 499831 18545353 ~ 18545976 (-) True G3270
TU3978 lncRNA downstream 606297 18439101 ~ 18439510 (-) True G3266
TU3968 lncRNA downstream 627741 18409870 ~ 18418066 (-) True G3257
TU4131 lncRNA upstream 31251 19077456 ~ 19077864 (-) True G3402
TU4132 lncRNA upstream 33229 19079434 ~ 19079665 (-) True G3403
TU4135 lncRNA upstream 38499 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA upstream 38775 19084980 ~ 19086692 (-) False G3405
TU4209 lncRNA upstream 129367 19175572 ~ 19180511 (-) True G3470
AMCG00003808 mRNA downstream 74712 18951252 ~ 18971095 (-) True AMCG00003808
AMCG00003809 mRNA downstream 97147 18944095 ~ 18948660 (-) True AMCG00003809
AMCG00003811 mRNA downstream 107843 18931764 ~ 18937964 (-) True AMCG00003811
AMCG00003807 mRNA downstream 133293 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003806 mRNA downstream 156595 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003817 mRNA upstream 42993 19089198 ~ 19098312 (-) True AMCG00003817
AMCG00003819 mRNA upstream 73610 19119815 ~ 19131852 (-) True AMCG00003819
AMCG00003820 mRNA upstream 96714 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003818 mRNA upstream 106411 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003821 mRNA upstream 134474 19180679 ~ 19196676 (-) True AMCG00003821
TU3909 other downstream 893426 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1100865 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3454077 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4234476 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5032786 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 378758 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 397811 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 397811 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4483314 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4483314 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile