RNA id: TU4209


Basic Information

Item Value
RNA id TU4209
length 3666
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G3470
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19175572 ~ 19180511 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttatttgtttaggtttttattttgtcattgttttcccTTGTATGAAAGCATGCTTTGAAGTATCAGATCAAAGCCAGGCATTTCTATGGTCAGGATTCACTCCACCTCGTATTTCTGGATTGATTCAGAATCGCCCGTGTGCTTTAATTACACCAGTGCTTTGCCCAAACAGCTGCATAACAGCGATGGCTCTCAAAGTCTATTTACATGAGAAAAGGAGTTTTACACTcaacctttttcttttatttacagaaatgaaATGCCACACCTGGAAAGCTGCAAGGGTGAGCATTTTATACAGGCAAgacatagaaataaataataaaggagGCTTGGTAATGTAAAGTGCTTATAATAACAACCACTTAACAACACATTGAAGattaaagaataacaaaagctttaaaaaaatctcattcCTCATACAGAACAGATTCTGTTGAAACACTCGTCTACGATATTCCTCTCCAGCTGGAATAAGGCGCACCGTTTCTAACCCAGCTCCTGTCTGAGACTCGTATGGCATTTGAAACCAAGAAtgaacagtgaaaacaaaacaaatgagggAATAGAGCAAGGGACGTCTATCTCCCCATCTTTTGATTACCTGTTCCAGATGGCTGCTCAGTGTTAATATCTAAATAtctcaaacaaaaaaacatggttcATTCTCTCATTTGACCCTTTGCAATTTTTGTCCATACTTTATATCAAGACTGTAAGAGTGagtgaataaatacaatccATGTTTTAGGTTacaatttttaacttttaatgtattttcaccaACAGACCATTTATTAAAGAGGATTTTAGATGTACATTTATCTTAAGCTGTCCATCATATCACCACCATATAGGTCATGCTTGCATACTATTCATATCCATTTGTTCCTAATTTAGAGGGGCTTTAAATAGCAGGTCTGTCTCAGGCGGCAGCTGAATTAAAAACCGCTTGCAGAATTCCAACAGGATTTAGCTGTTATTCTACCCCTAGATGTAAAAACAGAAGACATTTGCTTTGCGTTCAGATTTATTTGGCAAAGCAGCACTGCAGTTTACCGTCAGTCACTGGTACATCGCTTGCAAAGCATGTTACTAGTCATGTACATCATAGTCTGCATCCAATTCAgtacagaaaaagcaaaaaataaagcacaaaacTGATGAGCTCGTAACGCAGTGTATAGACAAGATTTCTCAGCATGTCAATCTGTACAGGAGATTCTACAGGTAACTAGAACAGCAATTCGTATACTgcatgttattttgtgttttgtttttgtttttgtttttaccataGAGAATAAGCTACAGAAAGAGAATAGCGGCTTTGCATTTGCAGTGTGCTTCTTGGTTTAAATAttgaaagcaggaaaaatgacTATTAGCATTGAGCGAGTGTTGTCTGCAGACAGAAATTGTAAGATGCACATGGTGTCTTAAGGTGCACATCAGCAAGTCGTAATAAAGGCTTTACACACTGCAGCAAAACAGTCCAGAAAGAAAGAGTTTTTCTCCAACTGAATGAATGAGTAATAAGATCtcattactgttatttattttagccaTAACTGGGCAAAATCTGTACCTTGCatccactttaaaaaaaaaaaaaaggtgcagGCATGAAAAATTTCCCAAATCCaaacttttccttttccttttaagTACAACTACTACATGTCTATTGTCCCGATCAGTTATGAGCTGCTCCACACCTctttatttgacaaaaaaaaaaagtcccgcaaaaaaaatgaaaactgatgcatttttttgtttttttttaatccaatagCTGCTTGAAACTGGAGAAGTCCATTCTgtttaataatgcaacacagGACAGGCTGATGCTGTTTCACAGTTCATCCCACCTGGACCACTGCTTGTCTTTGTCTGTTAAAGGCACGTATATCACCCCCATAAGAGGCTTCATTTTGGTGCTGCCATCTTCCAGCTTATCGTACTGCTCCAGCATCTGGTTTCCCCCAGCTGGGCCCACTGGAAGGATGAGCCGCCCGCCTGGCTTCAACTGGTCAAGGAGGCTTGTGGGACATTTGGTGCGGCCGCCCCCACATGAATGGCATCATACGGGGCTTCCTCTGGGAATCCCATTCGGCCGTCGCCTACTgtaatataagcacaataccgTATCAGCCTTTCAAACACAACAATCATCTAGCTGGTAACGTATCTTCTGAGAAACCCCAAACTggaattgtgtatttaattacgTATTTTATTTTCGTTTTTCTACAGACCCCTTAGGGATAGAGATGATGTTCTGATTAGtaattcatgtattattttaattagtccCAAGTTTGGGGTGCAAATTTCTAAAGACAAATGATGAAGAAACAGTATTtcactactactattatttaaatatttgtattaccatccatccatccatccattttcaatcaCTGCaatacacttattattattattgtccgACATTAAGGCACACTGAATTGCCATGGAAAAGATATCCCGTGCTCTTGTTTTCTTGGCTATCCTTTAAGTGATGAAATGTTATATCCTGAAAGCTCAAAGCACATTTTACAAAGCCACCATGATTTTGGTCAGGGTTACAATTGTAAGTGTAAAAAGTTACTAATATGATCAAATTAAACcgaaaaacaaatactttactTATAAACTCCTACCAACACATGAggacatatttatataaaccaatcattttagaaACTGTGATGACCATCCTTTTAGTATACAACAACAGTGTTTCAGCTGGGATTTTATTCCTCTGTGGTTACAACCACTCCTTACCACTGCTATACAGTCATTATTAGAAGACATGATCCTATTTTTCATGTTCGCAAAGTGGGAAACCGTGCAAAGATCACATTTGCGTAGGACTGTGATTCatggttttggaaaaaaaatactgtgatCAGATGCTTAGCAGCACAGAGATGTAAATTGTTCATTAGCTGCAGTTGGTTTGATCACAGCTCTGATTAAGGACTCCAGAACTcccataataaaacaaaacaacataaacaaaatctGTACAATAAGtcttaatattaattatgaatACTATAACAATCAAATAAGGAAGACATGAATAAAACTAAAGATATATCAATTTTGTTCTACACGTTACAAATCATGTAATGCAAACTAGCATTTCCAGTACTATCAATAAAAGCCTTGTCATAATGTTTACTGATACTACtacaataaaaagtattgtACTACATACAATCAGCAAATGGTGACACAAACTCCTGAAAATGCTGCTGTGATAATGCTACCAAGAACAACgaattatctgtattattttaggTCTGATTTGACcctttaatattgttttgtcaaagaatttaagaaaaatgcagGTTTAAGTTTGATTTATATCTGGGATAACCAGCTCTACTTTTAAACACATAAGATTCTTCACTGGAAAATCATATTAAGAGTGACtttaatacaaacaattaaaaaatgatggtcataggtaataaaaactacaCTTACTTACCAACCAGTTTTACTCTTCCAGATGTTATCAATGTAGGGTCATCTTTCTTTACATTGTTTATCGAATCATCTACAAGCTCCTTAATGTGGTCAATTCCTATGACTTTTCCCTTGGGACCCACCTGCACAAAAGATGCAACGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4135 lncRNA downstream 88880 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 88880 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 95907 19079434 ~ 19079665 (-) True G3403
TU4131 lncRNA downstream 97708 19077456 ~ 19077864 (-) True G3402
TU4124 lncRNA downstream 129367 19045807 ~ 19046205 (-) True G3395
TU4221 lncRNA upstream 176134 19356645 ~ 19357239 (-) True G3482
TU4226 lncRNA upstream 185546 19366057 ~ 19367009 (-) False AMCG00003825
TU4275 lncRNA upstream 263505 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 532324 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 719458 19899969 ~ 19900381 (-) True G3552
AMCG00003818 mRNA downstream 5921 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003820 mRNA downstream 25410 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003819 mRNA downstream 43720 19119815 ~ 19131852 (-) True AMCG00003819
AMCG00003817 mRNA downstream 77260 19089198 ~ 19098312 (-) True AMCG00003817
AMCG00003808 mRNA downstream 204477 18951252 ~ 18971095 (-) True AMCG00003808
AMCG00003821 mRNA upstream 168 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003822 mRNA upstream 21152 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003823 mRNA upstream 103485 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003825 mRNA upstream 181307 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003824 mRNA upstream 207854 19388365 ~ 19390719 (-) True AMCG00003824
TU3909 other downstream 1023191 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1230630 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3583842 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4364241 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5162551 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 244452 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 263505 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 263505 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4349008 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4349008 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile