RNA id: TU4221


Basic Information

Item Value
RNA id TU4221
length 595
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G3482
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19356645 ~ 19357239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTCTCTAGTCctgacagatttaaaaaaacattaaatgccataaagtatttttaagtgttttatgatcacattaaaaaacaactgtgtTTTCATGGTGGTTATGACATGTTACCTGTCCCTGTCAATCATTTATGGTTGACATGAATGATGTATGTATAATTGGCCATGTTTGTGAAAGATGATCAGTGTATCCTTTACTTCAAGAAGGAAATCCAATGCAACAAAGGTAATAGGTCATATTTATCCTAAAGCTTAGTAATTGTTTCCAGGAGTGATTTGGCACATAGATGAAACACGAACGACTAATTGTTTAGGCAGGCTCAGTACATCTCAAAAGTTGTATaaagtatttgtaatatttatacaaacataTGCATATCctccaaaaaaggaaaaacaaaagaaaacaacatgttCCTTGTGCTCATTTGAAGAGTCATGGTGATtcataataaatcatatatttgtaGTTATATTCaccaaatgtaattaattcaattgGCACAACTACTATCggaaatataattttagaaTGTGTCTGTATTGATCGAAATACACCCCAGATCTTTTTCACAATGTTCTGTTGCTTGT

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4209 lncRNA downstream 176134 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 269953 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 269953 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 276980 19079434 ~ 19079665 (-) True G3403
TU4131 lncRNA downstream 278781 19077456 ~ 19077864 (-) True G3402
TU4226 lncRNA upstream 8818 19366057 ~ 19367009 (-) False AMCG00003825
TU4275 lncRNA upstream 86777 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 355596 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 542730 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 544843 19902082 ~ 19903092 (-) True G3553
AMCG00003823 mRNA downstream 69462 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 116050 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 159969 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003818 mRNA downstream 186994 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003820 mRNA downstream 206483 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003825 mRNA upstream 4579 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003824 mRNA upstream 31126 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003829 mRNA upstream 117650 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 265370 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 319890 19677129 ~ 19677768 (-) True AMCG00003831
TU3909 other downstream 1204264 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1411703 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3764915 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4545314 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5343624 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 67724 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 86777 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 86777 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4172280 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4172280 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile