RNA id: TU4265


Basic Information

Item Value
RNA id TU4265
length 404
RNA type TUCP
GC content 0.53
exon number 1
gene id G3517
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19424963 ~ 19425366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacgcttgccattcaggccaaagagttcaatctttgtttcatcagaccagagaattttgtttatcatggtctgagagtccttcaggtgccttttggcaaactccaggcagctgtcatgtgccttttactgaggagtggcttccatctggccactctaccatacaggcttgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacatgctggagctctgtcagagtgaccatcgggttcttgctcacctccctgactaaggcccatctcccccgatcgctcagtttggccgggtggccagctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4226 lncRNA downstream 57954 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 67724 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 244452 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 338271 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 338271 19084980 ~ 19086692 (-) False G3405
TU4275 lncRNA upstream 18650 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 287469 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 474603 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 476716 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 482664 19908030 ~ 19908341 (-) True G3554
AMCG00003824 mRNA downstream 34244 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003825 mRNA downstream 51738 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003823 mRNA downstream 137780 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 184368 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 228287 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003829 mRNA upstream 49523 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 197243 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 251763 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 364027 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003837 mRNA upstream 651749 20077115 ~ 20078155 (-) True AMCG00003837
TU3909 other downstream 1272582 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1480021 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3833233 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4613632 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5411942 14009458 ~ 14013021 (-) True G2373
TU4274 other upstream 18650 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 18650 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4104153 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4104153 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 4104153 23529519 ~ 23533882 (-) False AMCG00003893

Expression Profile