RNA id: TU4275


Basic Information

Item Value
RNA id TU4275
length 537
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G3523
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19444016 ~ 19506753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATCCATCATGCCTTGTTACCACTGTGCAGGCtgctggtggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaattgggcatcgtttaaatgccacggcctacctgaccattgtttctgaccatgtccaccatgtacccatcctctgatggctacatccagcaggataatgcaccgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4226 lncRNA downstream 77007 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 86777 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 263505 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 357324 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 357324 19084980 ~ 19086692 (-) False G3405
TU4288 lncRNA upstream 206082 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 393216 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 395329 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 401277 19908030 ~ 19908341 (-) True G3554
TU4341 lncRNA upstream 522110 20028863 ~ 20029308 (-) False G3584
AMCG00003824 mRNA downstream 53297 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003825 mRNA downstream 70791 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003823 mRNA downstream 156833 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 203421 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 247340 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003830 mRNA upstream 115856 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 170376 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 282640 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003837 mRNA upstream 570362 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003838 mRNA upstream 997346 20504099 ~ 20512976 (-) True AMCG00003838
TU4265 other downstream 18650 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1291635 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1499074 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3852286 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4632685 14810786 ~ 14811331 (-) True G2500
TU5013 other upstream 4022766 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4022766 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 4022766 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4757154 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4781378 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU483288 True 499 lncRNA 0.44 1 CI01000304 5214385 ~ 5214883 (+)