RNA id: TU4288


Basic Information

Item Value
RNA id TU4288
length 218
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G3535
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19712835 ~ 19713052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttgtttcactcattaacatgcaaatcaatttataacttttttgaaatgcatttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4275 lncRNA downstream 206082 19444016 ~ 19506753 (-) False G3523
TU4226 lncRNA downstream 345826 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 355596 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 532324 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 626143 19084704 ~ 19086692 (-) True G3405
TU4305 lncRNA upstream 186917 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 189030 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 194978 19908030 ~ 19908341 (-) True G3554
TU4341 lncRNA upstream 315811 20028863 ~ 20029308 (-) False G3584
TU4342 lncRNA upstream 315811 20028863 ~ 20416071 (-) True G3584
AMCG00003831 mRNA downstream 35067 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003830 mRNA downstream 87994 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003829 mRNA downstream 234466 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003824 mRNA downstream 322116 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003825 mRNA downstream 339610 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003834 mRNA upstream 76341 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003837 mRNA upstream 364063 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003838 mRNA upstream 791047 20504099 ~ 20512976 (-) True AMCG00003838
AMCG00003840 mRNA upstream 1177080 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003842 mRNA upstream 1195338 20908390 ~ 20920636 (-) True AMCG00003842
TU4276 other downstream 206082 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 268092 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 287469 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1560454 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1767893 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 3816467 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 3816467 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 3816467 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4550855 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4575079 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile