RNA id: TU4306



Basic Information


Item Value
RNA id TU4306
length 1011
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G3553
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19902082 ~ 19903092 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACCAGTATATTTTGGTTATCCTTGACAAATTCACAAAGTGGATTGAAGCTTTTCCTTGCAGGCATGCCACTGCTGCCACTGTAGCGAAAACTCTCATCCAAAATGTGTTCACTAGGTGGGGACTACCAAAGGTGATTGATAGTGATCgaggaacacatttcacaagcaGTGTAGTGAAAGTTATGTGTCAAGCATTAGGCATCACCCAGAAATTACATATTCCATTCCATTCTCAATCGTCAGGAGTAGTCGAGCGTGGAAACCGCACTCtaaaaacacttgaaaaaaatgtgtcaagACAATCCAAAAAGGTGGGCTGAGGCATtacctctgtgcctaatggcaATGCGATCAACACCACACTCCACTACCAGAATTACACCACATCAAGCAATGACTGGACGTCTTATGCATGTCCCAGGACATTGTTTGCTTCCTTTAGAAGAACAACCTGTTCTTTTGCAAGCTGCTAATGTGACTTGGTTACGAAATTGCCTAGCGTCTGTAGATCAAATGCAACGCTTTGTAGCTAAACAATTAGGCCACAaacagagaagaagaagaactgCAGATTGGTGACAGATGTATGGTTcgaaattacaaacacaaacgcCATACCTTAGAAGCCGATTGGTATGGACAATTCCTCATTGTGGACAAATTAAGTCCAGCAGTGTACAAAGTGAAAATTCAGGAAAAAGGCAAAGATACTCTTAAATGGTTTCACATAATTCAGATAAAAACTGTTAAGTGATCACTGCTACCCTTGATCTTTCAGGTGTTCCTGAGAGAAAATGGAGACCATGATGCTATTCCTCGTTGGTTTCCTGGAGGTTGTCATTGTAGCTGCAATAGTTTACAAACAACCATGAGAATCCATAACCATTATGGGAATTGCAAGCCTAAAATTTGTTCTGAATATTGATAATCTGACTTAGATGTAGAAATTGCTGTAATAGTATCCATGTGTGTTATCCTCATTTAAACTCTATAATATGTGTTACTGGATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4305 lncRNA downstream 1701 19899969 ~ 19900381 (-) True G3552
TU4288 lncRNA downstream 189030 19712835 ~ 19713052 (-) True G3535
TU4275 lncRNA downstream 395329 19444016 ~ 19506753 (-) False G3523
TU4226 lncRNA downstream 535073 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 544843 19356645 ~ 19357239 (-) True G3482
TU4307 lncRNA upstream 4938 19908030 ~ 19908341 (-) True G3554
TU4341 lncRNA upstream 125771 20028863 ~ 20029308 (-) False G3584
TU4342 lncRNA upstream 125771 20028863 ~ 20416071 (-) True G3584
TU4345 lncRNA upstream 335421 20238513 ~ 20239078 (-) True G3587
TU4361 lncRNA upstream 464913 20368005 ~ 20372943 (-) True G3602
AMCG00003834 mRNA downstream 112257 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003831 mRNA downstream 224314 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003830 mRNA downstream 277241 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003829 mRNA downstream 423713 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003824 mRNA downstream 511363 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003837 mRNA upstream 174023 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003838 mRNA upstream 601007 20504099 ~ 20512976 (-) True AMCG00003838
AMCG00003840 mRNA upstream 987040 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003842 mRNA upstream 1005298 20908390 ~ 20920636 (-) True AMCG00003842
AMCG00003841 mRNA upstream 1047343 20950435 ~ 20959586 (-) True AMCG00003841
TU4276 other downstream 395329 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 457339 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 476716 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1749701 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1957140 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 3626427 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 3626427 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 3626427 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4360815 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4385039 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile