RNA id: TU4341


Basic Information

Item Value
RNA id TU4341
length 405
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G3584
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20028863 ~ 20416071 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acatgtgctttattgagcagggggaccttgcaggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactacgGTCCctgctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccatgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttgggatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgaaattaggagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4307 lncRNA downstream 120522 19908030 ~ 19908341 (-) True G3554
TU4306 lncRNA downstream 125771 19902082 ~ 19903092 (-) True G3553
TU4305 lncRNA downstream 128482 19899969 ~ 19900381 (-) True G3552
TU4288 lncRNA downstream 315811 19712835 ~ 19713052 (-) True G3535
TU4275 lncRNA downstream 522110 19444016 ~ 19506753 (-) False G3523
TU4345 lncRNA upstream 209205 20238513 ~ 20239078 (-) True G3587
TU4361 lncRNA upstream 338697 20368005 ~ 20372943 (-) True G3602
TU4367 lncRNA upstream 361875 20391183 ~ 20419999 (-) True G3607
TU4377 lncRNA upstream 546704 20576012 ~ 20576914 (-) True G3616
TU4378 lncRNA upstream 550056 20579364 ~ 20579571 (-) True G3617
AMCG00003834 mRNA downstream 239038 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003831 mRNA downstream 351095 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003830 mRNA downstream 404022 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003829 mRNA downstream 550494 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003824 mRNA downstream 638144 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003837 mRNA upstream 47807 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003838 mRNA upstream 474791 20504099 ~ 20512976 (-) True AMCG00003838
AMCG00003840 mRNA upstream 860824 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003842 mRNA upstream 879082 20908390 ~ 20920636 (-) True AMCG00003842
AMCG00003841 mRNA upstream 921127 20950435 ~ 20959586 (-) True AMCG00003841
TU4276 other downstream 522110 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 584120 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 603497 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1876482 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 2083921 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 3500211 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 3500211 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 3500211 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4234599 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4258823 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile