RNA id: TU4470


Basic Information

Item Value
RNA id TU4470
length 346
lncRNA type read_through
GC content 0.43
exon number 2
gene id G3695
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20905913 ~ 20953407 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaGGTACAATTGCACagagtcagggattttgtaggcatatagtcaggtgtatgattaaacaattacaccacacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaataattaactgaaacagaaacagctgtgtaggaggaataaaactgggggAGGAACAGCccaactcagctaacaaggtgcggttgctgaagacagtttactgtcaaaagtcagacaccatagcaagactgagcacagcaacaagacacaaggtagttatactgcatcagcaaggtctctcccaggcagacatttcaaggcagacaggggtttccagatgtgctgtccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4422 lncRNA downstream 23769 20831370 ~ 20882144 (-) True G3655
TU4408 lncRNA downstream 74814 20830832 ~ 20831099 (-) True G3646
TU4387 lncRNA downstream 306928 20594932 ~ 20598985 (-) True G3626
TU4379 lncRNA downstream 319163 20586520 ~ 20586750 (-) True G3618
TU4378 lncRNA downstream 326342 20579364 ~ 20579571 (-) True G3617
TU4524 lncRNA upstream 486719 21440126 ~ 21440361 (-) True G3735
TU4525 lncRNA upstream 490737 21444144 ~ 21444618 (-) True G3736
TU4526 lncRNA upstream 491361 21444768 ~ 21445218 (-) True G3737
TU4528 lncRNA upstream 493285 21446692 ~ 21447250 (-) True G3739
TU4552 lncRNA upstream 642442 21595849 ~ 21598381 (-) True G3760
AMCG00003840 mRNA downstream 7212 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003838 mRNA downstream 392937 20504099 ~ 20512976 (-) True AMCG00003838
AMCG00003837 mRNA downstream 827758 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003834 mRNA downstream 1116088 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003831 mRNA downstream 1228145 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003839 mRNA upstream 76672 21030079 ~ 21042693 (-) True AMCG00003839
AMCG00003848 mRNA upstream 283087 21236494 ~ 21238978 (-) True AMCG00003848
AMCG00003849 mRNA upstream 494148 21447555 ~ 21467681 (-) True AMCG00003849
AMCG00003850 mRNA upstream 525958 21479365 ~ 21480223 (-) True AMCG00003850
AMCG00003851 mRNA upstream 805170 21758577 ~ 21766000 (-) True AMCG00003851
TU4276 other downstream 1399160 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 1461170 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 1480547 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 2753532 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 2960971 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 2576112 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 2576112 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 2576112 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 3310500 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 3334724 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile