RNA id: TU4528


Basic Information

Item Value
RNA id TU4528
length 559
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G3739
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21446692 ~ 21447250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAACTATAGTGGAATGCTGTATGTTACTGTTTGAGGAAGCTGACTGTAAGAAAAAATGATTTCAACAGTTTTATGAACATGTATTTAagaacattgtaaaaaaaaaaaaagaaaaattaatatattatgccatgcacacacacccatatatatatatatatatatatatatatattagactgaaattgaaattactgaattacattttaatataaaggtATTGTAAGTGTGTAAGTCAAACCCATATAGATTTACATCATAAGTATCTGTTTTCCGCTCTGGTATGATTGCATTGAGGCAGCGAGAGCCATTCTATAATGGTGGAATGGCACTTGAACACACAGAGGAGTAGCCAACTGCCCACTCTTCAGCAGCCCACACAGCTCGGACACCATCGCCCGCAGCTTGGTCAGATCTGAGAAAGAGAACAAACTCCAGCTGACTAATTCACCAAACCCACAAATAACAATGGTGTGTATCTATATAATCATTTCCTTATGGTCTACAAAtggaaatcatttaaataaaaatatgtagtgTGTAATGATTCCTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4526 lncRNA downstream 1474 21444768 ~ 21445218 (-) True G3737
TU4525 lncRNA downstream 2074 21444144 ~ 21444618 (-) True G3736
TU4524 lncRNA downstream 6331 21440126 ~ 21440361 (-) True G3735
TU4470 lncRNA downstream 493285 20905913 ~ 20953407 (-) True G3695
TU4422 lncRNA downstream 564548 20831370 ~ 20882144 (-) True G3655
TU4552 lncRNA upstream 148599 21595849 ~ 21598381 (-) True G3760
TU4560 lncRNA upstream 285222 21732472 ~ 21732718 (-) True G3768
TU4637 lncRNA upstream 529574 21976824 ~ 21981516 (-) True G3825
TU4683 lncRNA upstream 716914 22164164 ~ 22170365 (-) True G3864
TU4703 lncRNA upstream 750351 22197601 ~ 22200678 (-) True G3882
AMCG00003848 mRNA downstream 207714 21236494 ~ 21238978 (-) True AMCG00003848
AMCG00003839 mRNA downstream 403999 21030079 ~ 21042693 (-) True AMCG00003839
AMCG00003841 mRNA downstream 487106 20950435 ~ 20959586 (-) True AMCG00003841
AMCG00003842 mRNA downstream 526056 20908390 ~ 20920636 (-) True AMCG00003842
AMCG00003840 mRNA downstream 547991 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003849 mRNA upstream 305 21447555 ~ 21467681 (-) True AMCG00003849
AMCG00003850 mRNA upstream 32115 21479365 ~ 21480223 (-) True AMCG00003850
AMCG00003851 mRNA upstream 311327 21758577 ~ 21766000 (-) True AMCG00003851
AMCG00003852 mRNA upstream 335342 21782592 ~ 21797499 (-) True AMCG00003852
AMCG00003859 mRNA upstream 470084 21917334 ~ 21948075 (-) True AMCG00003859
TU4276 other downstream 1939939 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 2001949 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 2021326 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 3294311 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 3501750 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 2082269 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 2082269 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 2082269 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 2816657 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 2840881 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile