RNA id: TU4541



Basic Information


Item Value
RNA id TU4541
length 333
RNA type TUCP
GC content 0.52
exon number 1
gene id G3751
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21549201 ~ 21549533 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacaactgggtcagagcatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcagccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4463 lncRNA upstream 458947 21089595 ~ 21090254 (+) True G3690
TU4443 lncRNA upstream 621399 20925812 ~ 20927802 (+) True G3670
TU4439 lncRNA upstream 636213 20912142 ~ 20912988 (+) True G3666
TU4432 lncRNA upstream 640684 20903572 ~ 20908517 (+) True G3661
TU4413 lncRNA upstream 688907 20835737 ~ 20860294 (+) True G3648
TU4545 lncRNA downstream 46323 21595856 ~ 21598430 (+) True G3754
TU4549 lncRNA downstream 51099 21600632 ~ 21600860 (+) True G3757
TU4559 lncRNA downstream 182958 21732491 ~ 21732699 (+) True G3767
TU4562 lncRNA downstream 200994 21750527 ~ 21759799 (+) True G3770
TU4577 lncRNA downstream 340990 21890523 ~ 21901648 (+) False AMCG00003853
AMCG00003847 mRNA upstream 13443 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003846 mRNA upstream 102080 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003845 mRNA upstream 110522 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003843 mRNA upstream 215977 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003844 mRNA upstream 252983 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003854 mRNA downstream 307957 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003853 mRNA downstream 341026 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003855 mRNA downstream 400798 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003856 mRNA downstream 420963 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003861 mRNA downstream 551755 22101288 ~ 22106730 (+) True AMCG00003861
TU4227 other upstream 2179935 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3396887 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 3406568 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 3865213 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 5509561 16035663 ~ 16039640 (+) False AMCG00003712
TU4563 other downstream 196317 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 373103 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 2160705 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 3133867 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 4244519 25794052 ~ 25795791 (+) False AMCG00003930

Expression Profile